Carya illinoinensis (pecan): 122276687
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Entry
122276687 CDS
T08745
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122276687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122276687
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
122276687
SWR1 complex
122276687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
HDA2-3
Myb_DNA-binding
DBINO
Motif
Other DBs
NCBI-GeneID:
122276687
NCBI-ProteinID:
XP_042942505
LinkDB
All DBs
Position
9:complement(3101859..3131114)
Genome browser
AA seq
2072 aa
AA seq
DB search
MASKGPRCKLDHETRAKRQKALEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLTQA
KRVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVRKFWIKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVDKPVQQCTTQDQVIINKEVDANDANESPEF
DFGSQSHTAGMDEDYDRQSEDESEDDEHTIEEDEAHITEEERKEELAALHNEMDLPLEEL
LKHYAMRKVSRESSPENGEDGAEPLSRESTPEMNGDGGKLTFMGEDHEKGKGNDLSVVSD
IDASNSIATGRRCAESNCDLSVTENSLLEIEKLQASDLSLISRESAKAHVLYDFSDEQED
GDFVLAAGEEKDDETTLAEEEELAKADISNPTDEIALLQKESEIPVEELLARYKKGFDDN
AVTDDESDYASALSDNLLDSPAHEDVELKQHAISVDEDVESGDCQPHSPSKEQQAGALEK
IEERDSENIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKHPLREYQHIGLDWLVTMYE
KRLNGILADEMGLGKTIMTISLLAHVACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFK
ILTYFGSAKERKYKRQGWLKLNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNW
KSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPISGM
VEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIFCRLSKRQRNLYEDFIA
SSETQATLANANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMGGIDFRLSSSICSMLP
AGPFSNVDLTGLGFLFTHLDFSMTSWESDEVKAIATPSSLIKERSDLSNIEEIGSGFKHR
KKLHGTNIFEEIHKAIMEERLREAKERAAAIAWWNSLRCEKKPIYSTTLRKIVTIEHPVY
DIHRLKSNPLSYLYSSKLADIVLSPVEHLQRMLDLVESFMFAIPAARAPPPVFWCSKSGT
SVFLHPTYKQKCSEMLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRKLKSE
GHRVLIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFIFILST
RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISDSTIEENILK
KANQKRALDDLVIQSGSYNTEFFKKLDPMELFSGHRSLPVKNLHKEKNSNNGNEVSVSNA
DVEAALKYAEDEADYMALKKVEEEEAVDNQEFTEEAIGRLEDDDFVNEDDLKVDDPIDQG
GWITTSNKETVVMLNGSNPSEERAPAVASKEDDIDMLADVKQLAAAAAAAGQAISSFENQ
LRPIDRYAIRFLEIWDPIINKAAVESQVRFEETEWELDRLERYKEEMEAEIDEDEEPLIY
ERWDADFATEAYRQQVEALAQHQLMEELECEAKEKEDAEDDNCDSMKNGMPSDPKPKSKK
KAKKAKFKSLKKRSLASELKPVKEEPSAEPMSVDDEIISHEVVTSSEIVSPISSVQKKRK
KAESALDVEEGKSLKKKLKKLKKPPSEQCPLDLDSNLSGMQHDEPVYSRPCDSVVDIEQK
TASRSRMGGKVSITTMPVKRVLMIKPEKLKKANIWSRECVPSPDFWLPQEDAILCAVVHE
YGPHWSLVSETLYGMTAGGRYRGRYRHPVHCCERFRELIQRYVLSAPDNLNTEKVGNTGS
GKALLKVTEDNIRMLLDFAAEQPDRELLLQKHFTALLSSVWKVTSRVDCRPSLPSSRNGL
YFGGRFLTSVRQISKNSREPLERMKFTNLGQSRKKLAAALHDAYYRQPDDRVSLCNRGDD
MSAATEQLEVTIEFQKEMGDSAVDFPSVISLSISREDAPPSVSEINGDDQHLKAFRNMAE
NRFRVSAKACVEDSLGWASSVFPTNDVRARSASKLPSLGKHKSSLSDSMKHSKSKFKRTS
MDHCEMPLLVAKPPLEPLPACALIDPNMGFDPSQPFILAVGNDNVGSNLLSGRDTELSME
MESLETVPHHYVPGLISGLDDCSLLPEYTDIG
NT seq
6219 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaaaggtcccaggtgtaaacttgatcacgagacgagagcaaaacgtcaaaag
gcacttgaagctccgaaagaacctcgtcgcccaaaaacacattgggatcacgtcttagaa
gagatggtttggttgtcaaaggactttgagtcagagagaaaatggaaattgacgcaagca
aagagggttgctttaagagcgagcaagggcatgttagatcaggctactaggggagaaaag
aaaatgaaggaagaggagcagcggttgagaaaagttgcccttaatatttcaaaggacgtg
aggaaattctggattaaaatagaaaagctggtgctttacaagcatcagatggagcttgat
gagaaaaagaaaaaggcgcttgataagcaacttgagtttcttttggggcaaactgagagg
tactcaacaatgttagcagaaaatcttgtagataaaccagtgcaacaatgtacgacacaa
gatcaagtgattattaacaaagaagtggatgcaaatgatgctaatgaatctccagaattt
gattttggatctcaatcacatactgcgggtatggatgaagattacgatagacaatccgaa
gatgagtcggaagatgatgagcacacaattgaggaagatgaggcccatataaccgaagaa
gaaagaaaagaagaattggcagctttacacaacgaaatggatcttccacttgaggaacta
ctcaaacattatgctatgaggaaagtgagcagagaaagtagtccagaaaatggtgaagat
ggggctgaaccacttagcagagaaagtactccagaaatgaatggggatggtggtaaacta
acattcatgggggaagaccatgaaaagggcaaaggaaatgatctttctgttgtcagtgat
attgacgcaagcaactcaatagccaccggtcgtcgttgtgctgaaagtaactgtgactta
tctgttacagaaaactctctgttggaaattgagaaacttcaagctagtgatctatcgtta
atttctagggagtctgccaaagctcatgtgctatatgattttagtgatgagcaggaagat
ggtgactttgtccttgctgctggggaagaaaaggatgatgagacaaccttggctgaggag
gaggaactggcaaaagctgatataagcaatcccacggatgagattgcattactacaaaaa
gagagtgaaatacctgttgaagaattgcttgctaggtataaaaagggcttcgatgacaac
gcagttacggacgacgaatctgactatgcatctgctttatcagacaatctcttggattct
ccggctcatgaggacgttgaacttaaacaacatgctatttctgtggatgaagatgttgaa
agtggtgattgtcagccgcattctccttcaaaagagcagcaagcgggagcccttgaaaaa
atagaagagagagatagtgagaatataattgctgatgcagctgcagctgcaagatcagca
caaccaacgggaaataccttttccacgaccaaagtgcgcaccaagttcccatttctcctg
aagcatcctcttcgtgagtatcaacatattggcttggattggcttgttacaatgtatgag
aaaagactgaatgggattctagctgatgaaatggggcttggaaaaacaattatgacaatc
tccttgcttgcacacgttgcttgtgaaaagggtatatggggccctcatctcattgttgtc
cccacaagcgtcatgctcaattgggagactgagtttctgaaatggtgtcctgcttttaaa
attctaacttattttggaagtgctaaagagcggaagtataagaggcaaggctggttgaaa
ctgaactcatttcatgtatgcataaccacttacagactggtcattcaagattcaaaagtt
ttcaagcggaagaaatggaaatacttgatcttagatgaagcacatctgattaaaaattgg
aagtcacaaagatggcaaactcttttgaacttcaattcaaaacggcgtattttattaact
gggacaccattgcagaatgatctcatggaactctggtctctaatgcattttttgatgcca
cacatctttcaatctcatcaggaattcaaggactggttcagcaatcctatatcaggaatg
gttgagggacaagagaaagtaaataaagaagttgttgaccgtcttcataatgtcctccgt
ccttttatactccgtcggttgaaacgagatgtggagaagcagctgcctatgaagcatgaa
catgtcattttctgtagactgtcaaagaggcagcgtaacttgtatgaagattttattgct
agctcagagacacaagctactcttgccaatgccaacttttttgggatgattagtgttatc
atgcaacttcgcaaagtatgcaatcatccggacttatttgagggtcgtccaattgtcagt
tcttttgatatgggtggtattgacttccgattgagttcttctatttgttcaatgcttcca
gcagggccattttctaacgtggacctaacaggtttggggtttttatttacccatcttgat
tttagcatgacttcttgggagagtgatgaagtgaaagccattgctaccccctcaagttta
atcaaggagcgctctgacttgtctaacatagaagaaattgggtctggatttaaacatcgg
aaaaagttacatggaaccaatatttttgaagagatccacaaagcaatcatggaggagaga
ctaagagaagcgaaggaacgggctgctgctattgcatggtggaattccttgaggtgcgag
aagaaacccatttactcaacaacattaaggaaaattgtaacaatagagcatcctgtttat
gatattcatcgtctgaagtccaaccctttgtcctacttgtactcctcgaagcttgcggac
attgtcctctcaccagtggaacacttacagagaatgttggaccttgttgaaagtttcatg
tttgcaataccagctgcacgagccccaccacctgtgttttggtgcagtaaatctgggact
tctgtgtttctgcacccaacttataagcagaaatgttctgaaatgttatcaccacttcta
tcacctatcagacctgcaattgtccggaggcaagtatatttcccagacaggcgacttata
cagtttgactgtggtaaattgcaggagcttgcagttttgctcagaaaattaaaatcagaa
ggtcatcgagtattaatcttcacccaaatgacgaagatgcttgatatcttggaggctttc
attaatttgtatggttacacttacatgcgtttagatggatccactcagccagaggagaga
cagaccctaatgcaacgctttaatacaaatccaaaaatatttattttcatcttgtcaact
cgtagtgggggtgttggtattaacctagttggggcagatacagttatcttttatgatagt
gactggaatcctgcgatggatcagcaggctcaggatcgatgccaccggataggacagaca
cgtgaggttcatatttatcgattaatcagtgacagcacaattgaagagaatattttaaag
aaagcaaatcaaaaacgtgcgcttgatgatctagttattcaaagtggaagctacaacact
gaattcttcaaaaagcttgatcctatggaactgttctctggtcatagatcacttccagtc
aagaatttgcataaggaaaagaatagcaacaatggaaatgaggtttctgtatctaatgct
gatgttgaggccgctttgaaatatgcagaggatgaagcagattacatggcattgaagaaa
gttgaagaagaagaagctgtggacaaccaggagtttacagaagaagccattgggaggttg
gaagatgatgattttgtaaatgaagatgatctgaaggtggatgatcctatagatcagggt
ggctggatcactacatcaaataaagaaactgtggtgatgttaaatgggagtaatccaagt
gaagagagagctcctgctgttgctagcaaagaagatgatattgacatgctggctgatgtc
aaacaattggctgcagcagcagcagctgctggacaagcaatctcctcctttgagaatcag
ctacgtccaatagatcgatatgcaattcgttttctggaaatctgggaccccattataaac
aaggctgcagtggaatctcaagttaggtttgaagagacagaatgggaactggaccgtctt
gagaggtataaggaagaaatggaagctgagattgatgaagatgaggaacccctcatatat
gagagatgggatgctgattttgcaactgaggcttaccgacagcaagttgaggccttggct
caacaccagctaatggaagaactggaatgcgaagctaaggagaaggaagacgctgaggat
gataattgcgattctatgaagaatggaatgccaagtgatcctaaacccaagtctaaaaag
aaggctaagaaagccaagttcaaatctctgaagaaaagatccttagcatctgaactaaag
cctgttaaagaagagccatcagcagaacctatgtcagtagatgatgagattattagtcat
gaggtggtcacctcttcagaaattgtttcaccaatttcgagtgtgcagaaaaaacgtaag
aaggctgaatctgcactggatgttgaagaaggaaagtccttgaaaaagaagttaaagaaa
ctgaagaagcctcccagcgaacaatgtcctttagatttagattccaacctgtcaggtatg
cagcatgatgaacctgtatattcaagaccatgcgatagtgtggttgatattgaacaaaaa
acagcaagcaggagcagaatgggaggtaaagtatccattactaccatgccagtaaagcgg
gttttaatgataaaaccagagaagctaaagaaggcaaatatatggtctagagagtgtgtt
ccatctcctgatttttggttgccgcaagaggacgcaatattatgtgctgtggttcatgaa
tatggccctcattggagcttggttagtgaaactctttatgggatgactgctggtgggcgt
tataggggaagatatcgccatcctgttcattgctgtgagaggtttagagaactcatccag
agatatgttttgtctgcacctgacaatcttaatactgaaaaggttggcaatacaggctcg
ggaaaggctcttcttaaagtaacggaggataacattcgaatgctgttagactttgctgcg
gagcagccagatagagagttactcctccaaaagcactttaccgctcttctttcttctgtc
tggaaggtgacatcacgtgttgattgcagaccaagcctcccatcatcccgaaatggtctc
tattttggtggaaggtttttaacttcagtcaggcagatttctaagaattcacgagaacct
ttagaaaggatgaaattcactaatttaggccagagtagaaagaagttagcagctgctctc
catgatgcctactatagacagccggatgacagagtctccctttgcaaccgtggggatgac
atgtcagccgctactgaacaactggaggtaacaatagaattccagaaggaaatgggggac
tctgcagtcgattttccatctgttataagtttgtcaatatcaagggaagatgctccacca
tctgtaagtgagattaatggggatgatcaacatcttaaagctttccgaaatatggccgag
aaccgtttcagggtttctgcgaaagcttgtgttgaagatagtctgggatgggcatcctct
gtattcccaacaaatgacgtcagggctagatcagcttcaaagttaccgtcactgggaaag
cacaagtcgtctctctctgactcaatgaagcattctaaatcaaagttcaaaagaacttca
atggaccattgtgagatgcccctccttgttgccaagccaccgttggaaccattgccggca
tgtgcattgattgatcctaatatggggtttgacccgtctcaacccttcatcctggctgtt
gggaatgacaatgtgggaagtaatttactttctggcagggatacggagctctccatggaa
atggagagtttggaaacagtcccacatcactatgttcctggcttaatctctggactcgat
gattgttcactattgcctgaatatactgacattggttaa
DBGET
integrated database retrieval system
