Carya illinoinensis (pecan): 122277002
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Entry
122277002 CDS
T08745
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04120
Ubiquitin mediated proteolysis
cill04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122277002
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122277002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122277002
Enzymes [BR:
cill01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122277002
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122277002
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122277002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
EIF3I
zf-C3HC4_2
WD40_RFWD3
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
zf-C3HC4
Beta-prop_HPS5
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
zf-C3HC4_3
WD40_like
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR75_1st
zf-C3HC4_4
zf-RING_5
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
U-box
YbfN
zf-RING_10
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
122277002
NCBI-ProteinID:
XP_042942816
LinkDB
All DBs
Position
9:complement(11174666..11182512)
Genome browser
AA seq
673 aa
AA seq
DB search
MEDTSLAAQALVPTVKPDHLPDPGTEPPPDQMAPESVGGELDKDTLCPICMQIITDAFLT
ACGHSFCYTCIVTHLRNKSDCPCCAHYLTTNHIFPNFLLDKLLKKNSARQVAKSASPFEH
LRQAIQQGCEVSIKELNGLLSLLAKKKRKMEQEEAETKLQILLDFLHCLRKQKLEEMNEI
QADLLYIKEDINAVKRYRTELYRAKERFSVKLRMLNDDPIAAKAWASLTDMHGSGIISGP
HCLQGQMGPQNKKADLNAQVSLQVFQRKDGNNGSDLQSVAPSALALARKKRVHSQFNDLQ
ECYLQKRRNWSGESHNGEESNTNPIKREGYHPGLDDFQSIMTTFTRYSRLRVIAELRHDD
LFHPANIVSSIEFDRDDEFFATAGVSRRIKVFEFSTVVNEPADVHCPVAEMSSRSKLSCL
SWNKYTKNYIASSDYEGIVTVWDITNRQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDC
KVKIWCTKQEASVLNINMTANICSVKFNPGSNIHVAVGCADHLVHYYDLRNISQPLHVLR
GHGKSVSYVKFLSNNELASASIDSTLRLWDVKKNLPLHTYRSHTNEKSFVGLTANSEFIC
CGSETNRVFVYHKAISRPMAWHKLGSLEGDDDDSDGVNDDDESYFISAVCWKSNSPTVLA
ANSEGKLKVLVLA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaagatacctcactggcggcacaggcactcgtccctaccgtcaaacccgaccacttg
cccgaccccggcaccgaaccaccgcctgatcagatggctccggagtccgtaggaggtgag
ctggacaaggacacgttgtgcccaatatgcatgcagatcataacggacgcgtttctcacc
gcctgtggccacagtttctgttacacgtgcattgtcacccacctgagaaacaagagcgac
tgtccttgctgcgctcactacctcaccaccaaccatatcttccctaattttctactcgat
aagttgttgaagaaaaattctgctcgtcaggtagctaagtctgcctcaccttttgaacat
cttcgtcaggcaatacaacagggttgtgaggtgtcaattaaggagctaaatggcctgctg
tctctacttgcgaagaagaagagaaaaatggaacaagaagaagctgagacaaaactgcag
attttgctagacttcttgcattgcctgcggaagcaaaagcttgaagagatgaatgagata
caagcggacctcctgtatatcaaggaggacatcaatgctgtcaagagatatagaacagaa
ctatacagggcgaaagaaagattctcagttaaactgaggatgcttaatgatgatcctatt
gcagcaaaagcatgggcttcattgactgatatgcatggaagtggcatcatctccggtcct
cactgtctgcaagggcagatgggaccacagaacaaaaaggctgacctaaacgctcaagta
agcctccaggtattccaaagaaaggatggtaataatggttccgatttgcagtctgttgct
ccatcagcactagctttagcaagaaaaaagcgggtccattcacagtttaatgacctacaa
gagtgttatttgcaaaagcggcgaaactggagtggagaatctcacaacggggaagaaagc
aacacaaatcctataaaaagagaaggttatcatccaggtcttgatgatttccaatccatt
atgactacctttacacgatacagtcgattgagggttattgctgaactaaggcatgatgac
ctttttcaccctgccaatatagtgtcaagtatagaatttgatcgagatgatgagtttttt
gccactgctggtgtctcacggcgcatcaaggttttcgagttctccacagtggtgaatgaa
ccagcagatgtccactgccctgttgcagagatgtcctcacgatcaaagcttagttgcttg
agctggaataagtacacaaaaaactatatcgccagcagtgattatgaggggatagtgacc
gtttgggacataaccaatcgtcagagtgtgatggaatatgaggagcatgaaaagcgagct
tggagtgttgatttttcatgcactgaaccatcaatgcttgtatcaggcagtgatgactgc
aaggttaaaatttggtgcacaaagcaagaagcaagtgttcttaacatcaatatgacagcg
aatatttgttctgtgaagtttaatcctggatcaaacattcacgtggcagtgggttgtgca
gatcatctcgttcactattatgacttgagaaatatcagccaaccactacatgtacttaga
gggcacggaaaatctgtttcatatgtaaaattcttgtctaacaatgaactagcttctgca
tctattgacagcacgttgcggttgtgggatgtaaagaaaaatctgccactgcacacatat
agaagtcacacgaatgagaagagttttgtgggtctcacagctaatagcgagttcatatgt
tgtggtagcgagacaaatcgagtatttgtctatcacaaggctatctctagacctatggct
tggcataaacttggctctctagaaggagatgacgacgacagcgatggtgtcaacgacgat
gacgaatcatactttatcagtgctgtttgttggaagagtaatagcccaacagttttggct
gcaaatagtgaaggaaaacttaaagtgcttgtacttgcataa
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