Carya illinoinensis (pecan): 122277168
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Entry
122277168 CDS
T08745
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122277168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122277168
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122277168
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122277168
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122277168
NCBI-ProteinID:
XP_042942996
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All DBs
Position
9:1915993..1917099
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AA seq
280 aa
AA seq
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MHTSDSPPPLPVLIRSVWSQNLDYEFGLIRSVIDSYPIVAMDTEFPGVVVRLESDDRDFQ
GRQPARHYMVLKANVDRLNLIQIGLTLSDEEGNLPDLGTDNLYIWEFNFRDFDVARDAHA
HDSVELLRRQGIDFERNREFGIDSVRFAELMMSSGLVCNDSMNWVTFHSAYDFGYLVKML
TQRVLPDDLHEFLALVEVFFGPRVFDVKHLMRFCASLYGGLDRVSQALNVIRIIGKSHQA
GSDSLLTLHAFEKIKKEYFGKDNLIEKYAGVLYGLDVSDL
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcacacgtcggactcaccgcctccgcttcccgtcctcatacgatcggtatggtcgcaa
aatcttgattacgagttcggtttgatccgatcagttatagattcttaccccatcgtcgcg
atggacacagagtttcccggcgtcgtggttcgacttgagtcggacgaccgggacttccag
ggtcggcagcccgcccgtcattacatggtcctcaaggccaacgtcgaccgcttgaatctg
atccagatcggtctcaccctctcagatgaagagggaaatcttccggatctgggcacggac
aacctttacatatgggaatttaacttcagggactttgacgtggcgcgtgacgcccacgcc
cacgactccgtggagttgctgaggcgccaagggatcgactttgaaaggaaccgggagttt
gggatcgattccgtccggttcgccgagctgatgatgtcgtcggggctcgtctgcaacgac
tcgatgaactgggtcactttccacagcgcatacgatttcggatacttggtaaagatgctg
actcagagggtcttgccggacgatttgcacgaatttcttgcccttgtcgaggtgttcttc
gggcctagggttttcgacgtgaagcatttgatgcggttctgcgcgagtctctatggtgga
ttggaccgggtatcccaggccttaaacgtgatacggattattgggaagagccaccaagcc
gggtcagatagcttgctgactctgcacgcattcgagaagatcaagaaagagtatttcggc
aaagataatctgatagaaaagtacgctggtgtgttgtatggattagatgtttctgatctt
tga
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