Carya illinoinensis (pecan): 122277657
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Entry
122277657 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57 isoform X1
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122277657
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122277657
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
Helicases
122277657
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
T4SS-DNA_transf
AAA_19
Motif
Other DBs
NCBI-GeneID:
122277657
NCBI-ProteinID:
XP_042943677
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All DBs
Position
9:35368163..35372932
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AA seq
531 aa
AA seq
DB search
MEKASFLFSGIHFDRKKFAKDFTRFQEKKEDKLIEDSNFLETEISEPGEGKTSFKKRKRK
TLASETIEGFTVFKSSKSAAAAAPPVVLNEENDQTENRLSKEKKELYRQQERDALSRKKY
NIHVSRNNVATPLQSFAELSSRYGCEPYLLHNMAKLGFKEPTPIQRQAIPVLLSDQECFA
CAPTGSGKTMAFVCPMLMKLKDASTDGIRAVILCPTRELAVQTTRESKKLAKGKKFRIKV
MSRQLLRNTDLSKLPCDILISTPLRLRLAIRKKKLDLRRVQYLVLDESDKLFEQGLLKQI
DSVVKACSNPSIIRSMFSATLPDFVEELARTIMHDAVRVIVGRKNTASESVKQKLVFAGT
EEGKLIALRQSFAESLNPPVLMFVQSKERAKELYEELAYDNIRVDVIHSDLSQSQRENAV
DDFRAGKTWILIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRTGEAITF
YTKKDVPFLRNIANIMTASGCEVPSWVMSLRKMKWKKHRPQRGSISTKPKD
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagcctcctttttgttttctggtattcactttgatcggaagaaattcgccaaa
gatttcaccagattccaggagaagaaagaagataaattgatagaggactcaaacttcctt
gaaactgaaatatctgaaccgggggaggggaagacttctttcaagaagcggaagcggaag
acactggcttcagaaacgatagagggattcacagtctttaagagttcgaaatcagcagca
gcagcagcaccacctgtggtcctgaacgaagagaatgatcaaaccgaaaataggctctcc
aaagaaaagaaggaactatataggcaacaagagcgggatgctctgtcacgcaagaagtac
aacattcatgtttcccggaataatgtagcaaccccacttcaaagtttcgcagagttaagc
tctagatatggttgtgagccttatttgttacacaatatggccaaactcggatttaaagag
cctacaccaatccaacggcaggctattccagtccttttatccgatcaggaatgctttgca
tgtgctccaactggatccggtaaaactatggcttttgtgtgtcccatgctaatgaaactt
aaggatgcctcaactgatggcatccgagctgttatcctctgtcccacccgagagctggct
gttcagaccaccagagaaagtaagaaactggcaaaagggaaaaagttccgtatcaaagtg
atgtcgagacagctattaagaaatactgatttgtcaaagttgccttgcgatatacttata
tcaacaccactaaggttaaggttggctattcgcaagaagaagcttgacttaagaagggtt
cagtatcttgtcctggatgaatctgataagttatttgagcaaggtttattaaagcagatt
gattctgtggtcaaggcttgctcaaatccttcaataatacgctccatgtttagtgctacc
ttacctgactttgttgaggagcttgcacgcacaataatgcatgatgctgttagagttatt
gttggccgaaagaacactgcttccgaatcagtgaagcaaaaattggtttttgccgggact
gaagaaggaaagcttattgcacttcgccaaagctttgcagagagtttgaatccacctgta
ttaatgtttgtacaaagcaaggagcgtgcaaaggaattatacgaggaacttgcatatgat
aacataagagttgatgtcatccattctgatttgtcccaatcacagcgagaaaatgctgtc
gatgatttcagagctggcaagacatggattttgattgccactgatgtaattgcccggggt
atggatttcaaaggtgtcaactgtgtgattaattatgattttccagactctgcctctgca
tatatccacagaattggtcgatcgggcagagcagggaggacaggggaagctattactttt
tacaccaagaaagatgttccattcctgcggaacatcgcaaatataatgacagcttccggc
tgtgaagttccatcttgggtcatgtcattgcgcaagatgaaatggaagaagcaccgtcca
caaagaggctcaatatcaaccaaaccaaaagattag
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