Carya illinoinensis (pecan): 122277704
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Entry
122277704 CDS
T08745
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
cill03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122277704
03460 Fanconi anemia pathway
122277704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122277704
03036 Chromosome and associated proteins [BR:
cill03036
]
122277704
03400 DNA repair and recombination proteins [BR:
cill03400
]
122277704
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122277704
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
122277704
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
122277704
FA (Fanconi anemia) pathway
Downstream FA components
122277704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Tower
Motif
Other DBs
NCBI-GeneID:
122277704
NCBI-ProteinID:
XP_042943730
LinkDB
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Position
9:complement(42645419..42654287)
Genome browser
AA seq
1121 aa
AA seq
DB search
MSTWQIFSDAGNSFRWGTSDQNPQIEPEGDSDSPNANHIYSHYTSSSLPSMSDLLLQGCS
KLLDTRGESAGSFPAFQTGLGKLVTVKQSSIAKALSVLGEDTGQVLARDNGCNSSNSLFQ
TGSGKTVNISSDGLVRAKTLLGLEEDTDNCVSQGYQHSAKSNTPFGWRGLSPLEMGEGVN
DSVIKDVRSVPRHLFVSKIGSGGSRLKNHGNPNVMQPEMHSSSLKPPPIKFQTAGGRSLS
VSGDALKRAMSLLGEPGLGTFLNEGDADDSIFSFSKETRLTDTSSNEGNDPRTPFSHEKM
ENCKNMPNIFISPLRSSSYQGRLPVKSEDIIAGNNLIKEFDAVHHGNACRLNSNASSLGK
RLSDGQGGSDTVAKSSLANGVGSRINSFGRSPARPLVDISNTIGTACTNNGQITTVKRIL
GKSSISPFKKPRSSKFSTPLNSTVPFISNGLSTSTSEPSCCKTGISSRYPFKIPRMYVKE
FIKVPPSNQNMSEVLSDQIRCIKSTNAEKYTFRDETGLNCIGPEAFFHMLARTGGLEQYA
SKEWVINHYKWIVWKLACYERYYPSKAAGKFFTMSNVLEELKYRYEREVNHGHRSAIKRI
LEGDASPSLMMVLCISAVCSNCDLKNDTSSVAETGAQNSNATKVELTDGWYAMDAVLDAQ
LSKQLAAGKLFVGQKLRIWGAGLCGWVGPVSPLEVSRTVSLLLHINGTYRTHWADRLGFC
KGVGAPLAFRCIKSNGGPVPLTLVGVRRIYPLLYKERLSNGGSIVRSERMESKMVQLYNQ
RRSTVVEGIVSEFQRGAKDSNNYNDTDSEEGAKILRILETAAEPEVLMAEMSPEQLTSFA
TYQAKLEATKQSDMEKAIKKAFEGTGLGEREVTPFMRVRVVGLTNKIYHGKDSPKEGLIT
IWNPTDKQQHELAEGQAYSVAGLVPINSDANTLYLQARGSTTKWQPLSSQVTEHFMRFHS
PRKSVLLSGLGEVPLSSEFDIAAVVVYVGEVFADPHQRKQWVFVTDGSISESRSEELSNS
LLAISFCSSDIDDSSFAPVNSNLAGSTVGFCNLIKRAKDQMNHLWVAEATENSIYFLNLD
PRPCSHLKNAASLTQKWARMSSLTLDKLREKVLFIIGDCKG
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtctacatggcagatattctccgatgccggcaacagcttccggtggggaacctccgac
caaaatccccaaatcgaacccgaaggtgattctgattcaccaaatgctaatcatatctac
agtcactacactagctctagtctgccttccatgtccgatctcctgctccaagggtgttct
aagcttctggatactcgcggtgaaagtgcggggagctttccggcattccaaactggattg
ggaaaattggtcaccgtgaaacagtcttcgatagcgaaagcattatctgttcttggcgaa
gatacaggccaagtgctagctagagataatggatgtaattcctcaaattctctattccag
actggctctggtaaaactgtcaatatatcttcagatggtctggttagagccaagacattg
ttgggattggaagaagatactgataattgcgtttctcaaggctatcaacattcggcaaaa
tcaaatacgccatttgggtggcgaggtttatctcctctagaaatgggagagggagtgaac
gatagtgtgattaaggatgtcaggtcagttccaagacatttgtttgtttctaagattggt
tcaggaggaagtagattgaagaatcatggaaatccaaacgttatgcaacccgaaatgcat
agttcatctctcaaaccacctccaatcaagttccaaactgctggtggaagatctctatct
gtctctggtgatgcactgaaacgtgcaatgagccttcttggtgaaccagggctgggaact
ttcttgaatgaaggggatgcagatgattcaattttttctttttcaaaggagacaagattg
actgatacttcatcaaatgagggaaatgatcctcggactcccttttctcatgagaaaatg
gaaaattgcaaaaatatgccaaatattttcatatccccattacggtcgtcttcttatcaa
gggcggttgcccgtcaagtcagaagatattattgcagggaataacttgatcaaggaattt
gatgctgttcaccatggcaatgcttgtaggttaaacagtaatgcatcttctcttgggaag
cggttaagtgatggccaaggtggttccgacacagtagcaaaaagttctttggctaatggt
gtcggttcaaggattaattcatttggacggtcaccagccaggccattggttgatatttca
aataccattggcacggcttgtacaaataatggacagataactactgtaaagagaatactc
gggaaaagttctatttctccatttaaaaagccccgcagctccaaattttccacccctttg
aatagtactgttccatttatttccaatggtttatctacttcaacatctgaaccttcatgc
tgcaaaactggaatttcctcacgctacccatttaagattccaagaatgtatgttaaggaa
tttattaaagtacctccgtcaaaccagaatatgtcagaggttttgtcagaccagatcaga
tgcatcaaatcaactaatgcagaaaagtatacttttcgtgatgaaactggattaaattgc
attggcccagaagcttttttccacatgttggctcggaccggaggattagagcaatatgct
tcaaaagagtgggtcataaatcactacaagtggattgtttggaaactagcatgttatgag
agatactatccctctaaagctgctggaaaattttttaccatgtccaatgtgctcgaggaa
ttgaagtatagatatgaaagagaagtcaatcacggccaccgctctgcaattaaaagaata
ctggaaggggatgcatcgccttctttgatgatggttctatgcatttcagcagtttgctca
aattgtgatctgaagaatgatacttcttccgtggcagaaactggggctcaaaatagtaat
gcaacaaaagttgaactaactgatgggtggtatgcaatggatgctgttttggacgcacag
ctatcaaagcagcttgctgctggaaaactgtttgtgggacagaaacttcggatctgggga
gcaggattatgcggctgggttgggcctgtttcaccccttgaggtgtcaaggacagttagt
ttgctattgcacataaatgggacgtacagaactcattgggctgatcgactgggattctgt
aaaggcgttggtgctcctttagcatttaggtgcattaagagtaatgggggtcccgtgcct
ctgactttagttggagtcagacggatataccctctcctctacaaggagaggttaagtaat
ggaggatctattgtgagatcagagaggatggagagtaaaatggtgcaattgtacaatcag
aggcgatctactgttgtagagggcattgtttctgagtttcaaagaggcgcaaaagattca
aataattataatgacactgatagtgaagaaggagcaaaaattttgaggatacttgagacg
gctgcagaacctgaagtattaatggcagagatgagtccggagcagctaacctcttttgct
acttatcaagcaaaactagaggcaaccaagcagtcagacatggagaaagcaatcaagaaa
gctttcgaaggtactggcttaggtgagagagaagtcaccccatttatgagagtgagagtg
gttggattaacaaataaaatctatcacggaaaggacagcccgaaagaagggttgataaca
atctggaacccaacagacaagcagcaacatgagctggccgagggtcaggcttattccgtt
gcaggacttgtacctattaattctgatgcaaataccctatacttgcaagccaggggatcc
actaccaaatggcagcctttatcttcccaagtaaccgaacactttatgcgatttcacagt
cctcgcaaatcagtcttactgtcgggtttgggtgaggttccactttccagtgagtttgat
attgctgcggtcgtagtgtacgtgggggaggtttttgcagaccctcaccaaaggaaacag
tgggtgtttgtgacggatggctccatttctgagtcacggtcagaggaattatccaattct
ttacttgccatcagcttctgctcatcagacattgatgattcatcatttgcaccagtcaac
tctaatcttgcaggatccacggttggtttttgtaatctcatcaagagagcgaaggaccaa
atgaatcatctctgggtagcagaagctacagaaaattcaatctactttctaaatcttgat
cctcgcccttgttctcacctaaaaaatgcagcttccttaacgcaaaaatgggcaagaatg
tctagtttgactttggataagcttagagagaaggttttatttatcattggtgattgtaag
ggctag
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