Carya illinoinensis (pecan): 122278028
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Entry
122278028 CDS
T08745
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122278028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122278028
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122278028
mRNA degradation factors
5'-3' decay
Decapping complex
122278028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
122278028
NCBI-ProteinID:
XP_042944022
LinkDB
All DBs
Position
10:10420148..10431011
Genome browser
AA seq
1395 aa
AA seq
DB search
MASSPENQNLLQNQNQQIDVQKLFKPSPNPPPPTLPTSSSPFPSPSGNLNSSPSFPTPAP
TSSTPYLMPSSSYPPPTGPSFPFHPHFLPYPPSPLDHFQQQQQHQLLPNSARLMALLTTQ
NPPSSPSNSNNNLDFPQLSMPFPSPSSSSPSPSNTILSVPPPTRLLSTKLPKGRHLIGDR
VVYDIDARLQGEVQPQLEVTPITKYGSDPGLVLGRQIAVNRSYICYGLKLGNIRVLNINT
ALRSLLRGHTQRVTDMAFFAEDVHLLASAGVDGRVFVWKIDEGPDEEDKPQITGKIVIAI
HIEVEGESVHPQVCWHPHKQEILMVAIGSYILKIDNTKVGKGEVFSAEEPLKCSIDELID
GIQLVGKHDHEVTELSMCQWMTSRLASASIDGSVKIWADRKALPLAVFKPHDSNPVHSVT
FLTAPHRPDHIVLITAGPLNREVKIWTSAGEEGWLLPSDTESWKCTQTLDIKSSSEPKTE
DTFFNQVISLPHAGLLLLANAKKNAIYAVHIEYGPNPAATRMDYISEFTVTMPILSLTGT
SDSLPDGEHIVQVYCVQTQAIQQYALHLSQCLPPPLDDVELEKSDSTVSRVFDASDGSAS
FEPPHGCKPTEISVVNATPMPPILSSSTEIGLVVSLPANLASSEVTSLLEVALSGVETMP
SDFPSHVTAENIHTISPPLPLSPRLSRKLSGFRSPLNSNETNPPLTDHGDDQSAPEYSSD
RRMNFVKDSMADVPSLDENLKKGDKSTAPSGISMVPNPPIVFKQPTHLVTPSELLSTVSS
SSENTQISQVVNVVEAKVQDVAVNNDAESPEVEVKVIDETGSSQNNEFDCQRDSHIMVAE
KKEKSFYSQASDLGIQMARDCFVGTYNVERSRQANDVGITKAPNQPPNTSVEEAQDTTKD
VPTKVGESETPIAVLPSPAPAPKGKRQRGKNAQVSGSSSPSPSPFNYADSSNEPGGSSGA
PSIEAALPQLLAMQAMIDQLMSTQKEMQKQMNVIVSGSFSKEGKRLEGSLGRSMEKVIRA
NTDALCARFQEENTKHEKLEHDRMQQITNLITNHMNKDLPAVLEKTLKKEIALIGPAVAR
AITPIVEKTVSSSIMDSFQKGVGDKAVNQLEKSVSSKLEGTVTRQIQAQFQISGKQILQD
ALRSSLEAAIIPAFEISCKAMFDQVDITFQKGLSKHTTAAQQQFEATHSPLAIALRDAIN
SASAITQTLSGELADGQRQLLAIAAAGANSKAVNPLVTQMSNGPLAGLHEMGEAPLDPTK
ELSRLIAECKFEEAFTGALHRRDVSIVSWLCSQVDLQRILSTVPLPLSQGVLLALLQQLA
YDIGNETPRKLTWMTDIAVAVNPADPTITVHVHPIFEQVYQILGHHRNLPTTSASETSSI
RLLMHVINSVLMSCK
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctcccgaaaaccaaaatcttcttcagaatcaaaatcaacagattgatgtg
cagaagctctttaaaccctcacccaatcctcctcctcctacacttcctacttcttcttct
ccatttccttctccttctggaaatttgaattcctccccatcttttcctactcctgctcct
acttcatctactccttatctcatgccttcatcctcatatcctccacccactggcccttct
ttccccttccacccccacttcctcccttacccaccttctccacttgaccatttccagcag
cagcagcagcaccagcttcttcccaatagtgcccgtttgatggctctcttgacaacccaa
aatcctccttcctccccctccaactccaataataatcttgatttccctcagctttctatg
cccttcccttcgccgtcttcgtcttcaccctcgccttcgaacactatcctttccgtacca
cctcccacccggttactcagcaccaaactccccaagggacgccatttgatcggtgaccgt
gttgtttacgacatcgatgcccgcctgcaaggcgaagtgcagccccagcttgaagtcact
cccatcaccaagtacggctccgatcccggcctagttcttggccgtcagattgctgttaat
agatcttacatatgttatggtctcaagctgggtaatatacgcgtcctcaacataaatacc
gcgttaagatctttgcttcgtggccacacacagagggtaactgatatggctttctttgcc
gaggatgttcaccttttggccagtgctggtgtagatggacgagtttttgtatggaagatc
gatgagggcccagatgaggaagacaaacctcaaattacaggcaaaattgttattgctatc
catatagaagtagaaggggaatcggtccacccacaagtgtgttggcatcctcacaaacaa
gaaattttgatggttgctattggaagttatatccttaaaattgacaacacaaaagttgga
aagggggaagtattttcggcagaggaacctcttaaatgctccattgatgaactaattgat
gggatccaattggttggtaaacatgatcatgaagttacagagttgtcaatgtgccaatgg
atgaccagccgcttagcttcagcatcaattgatggctcggtgaagatttgggcagaccgc
aaggcattaccacttgcagtattcaagccccatgatagcaatcctgtgcattctgtgaca
ttcttgactgcccctcaccgtcctgatcacattgttcttattacagcggggccactgaat
cgggaagtgaaaatatggacctctgcgggtgaggaggggtggttgttgcctagtgatact
gaatcatggaagtgtactcaaactttggatataaagagttcttctgaacccaagactgag
gatacattctttaatcaagtcatatcgttgccccatgcaggccttttattacttgcaaat
gccaagaagaatgctatatatgctgtacacatagaatatggacctaatccagctgcaacc
cgcatggattatatttctgagtttacggtcactatgcctatcttgagtcttactggaact
agcgacagtttaccagatggagaacatattgtccaggtctactgtgtccaaacacaagcc
attcagcaatatgcacttcacctatctcagtgcctgccaccacccctagacgatgtggag
ttggagaaatctgactccactgtttctcgtgtatttgatgcttctgatggttctgcttct
ttcgaaccacctcacggatgtaaaccgactgagatatctgttgttaatgcaactcctatg
ccacctattctttcgagcagcactgaaattggcctggtagtgagccttcctgcaaacttg
gcttcttctgaggttactagcttgctggaagttgctctttctggtgtggaaacaatgcca
agtgattttccttctcatgttacagcagaaaatatccacactatatcacctccccttcct
ttgagtccaagattaagtcgcaaattatctggttttagaagcccattaaatagcaatgag
actaatccgcctctcactgatcatggtgatgaccagtcagctcctgaatattcatctgat
cggagaatgaactttgtcaaagatagcatggctgacgtgcctagcttagatgaaaatttg
aagaagggtgataaaagtactgcaccgagtggtatttctatggttcccaatcctccaata
gtctttaaacagccaacgcatctggtaactccatcagagctattatctacagtttcttca
tcatctgagaatacccaaattagtcaagttgtgaatgtggtagaggcaaaggttcaagat
gtggcagtaaacaatgatgcagaaagtcctgaagtagaggttaaagtcattgatgagaca
ggtagcagtcaaaataatgagtttgactgtcagagagattctcacattatggttgcagag
aaaaaggagaaatcgttttattcccaggcatcagatcttggcattcagatggctagagat
tgttttgtgggaacttacaatgtggagagatcacggcaagctaatgatgtcggtattact
aaggcaccaaaccaacctcctaacacgtctgtggaagaagctcaagacacgacgaaagat
gtacccacaaaggttggcgaatcagaaactcccattgcagttttgccatctcctgcacca
gctccgaaaggaaagagacaaaggggtaaaaatgctcaagtgtctggttcatcttcccct
tctccaagtccttttaactacgcagattcatcaaacgaaccaggtggcagctcaggtgcc
ccgtctatagaagctgctttgcctcagttattggctatgcaggcaatgattgatcagtta
atgagcacacaaaaggaaatgcagaagcagatgaatgtgattgtttctggctcattttcg
aaagaaggtaaaagactagagggatccttgggccgaagcatggagaaagttatcagggct
aacactgatgctttgtgtgctcgtttccaagaggaaaacacaaagcatgagaaattagaa
catgaccgtatgcagcaaataacaaacctgatcacaaatcatatgaacaaggacttgcca
gctgtgcttgagaaaactttaaagaaggaaatagctttaattgggccagctgtcgctcgt
gcaattactccaattgtggaaaaaaccgtgtcatcatctattatggactcattccagaaa
ggagtaggagataaggcggtgaaccaactagagaagtcagttagttcaaaactcgaaggt
acggtgactaggcaaattcaagcacagtttcaaatttcagggaagcaaattcttcaggat
gcattaaggtctagcttggaagctgcaatcattcctgcatttgagatttcatgcaaagct
atgtttgaccaagttgatatcacattccagaaggggcttagcaaacatacaactgctgct
cagcagcagtttgaggctacacattctccacttgccattgctctaagggatgcaattaat
tcggcatcagcaatcactcaaacattgagtggagaattggctgacggccaacgacagtta
ttagccattgcagcggcaggtgccaactcaaaagcagtaaatcccttggtaacacaaatg
agcaatgggccattggctggtcttcacgagatgggtgaggcacctttggatccaactaaa
gaactgtctagattgatagctgagtgtaaatttgaagaagcattcaccggagcccttcac
agaagggatgtctcaatagtttcgtggttatgttctcaggttgatttacaaagaattttg
tcaacggtgccactccctttgagccaaggagttctgctagctcttctccaacaattggct
tatgatattggcaacgaaacacccagaaagctgacatggatgacagatatagctgttgcc
gtaaacccagcagatccaacgattacagtgcatgtgcatcccatttttgagcaggtatac
cagatactgggtcatcatcgcaacctaccaaccacctctgcttcagaaaccagcagcatc
cgccttcttatgcatgtcatcaactctgtgttaatgagctgtaaatga
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integrated database retrieval system
