KEGG   Carya illinoinensis (pecan): 122278049
Entry
122278049         CDS       T08745                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03020  RNA polymerase
cill03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122278049
  09124 Replication and repair
   03420 Nucleotide excision repair
    122278049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cill03021]
    122278049
   03400 DNA repair and recombination proteins [BR:cill03400]
    122278049
Transcription machinery [BR:cill03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     122278049
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122278049
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 122278049
NCBI-ProteinID: XP_042944051
LinkDB
Position
10:10382308..10385585
AA seq 243 aa
MEKGGKGFSLPTKTARKSSLKSTTTKQASLKGKDDSSAKSKRAMKVQFDVEGSLGKFETP
LPKGDSSKWGKGDKTAKGGKGSVSKPPPPLELKIEQELPENVKCMMDCEAADILQGIQDQ
MTILSKDPEFKLPPSFDRGLLYAKRVDHYTNPPSVRQVLQTLKKYGVSDGEICVIANVCP
ELVDEVFALVPSLKNKRSKLSEPLKDVLVELAKLKKSTSLESQMKSAEAGNPGNVGGLGV
VDL
NT seq 732 nt   +upstreamnt  +downstreamnt
atggagaaaggagggaaagggttttctctacccaccaagacagctcgaaaatcttctctc
aaatccaccacaacaaaacaagcatccttgaaagggaaggatgatagctcagcaaagtca
aagagggcaatgaaagttcagtttgatgttgaaggttcacttgggaagtttgaaactcca
ctacccaaaggagattcaagcaaatggggaaaaggagacaagactgctaaaggtgggaag
ggttcagtttctaaaccaccaccaccactggagctcaaaattgagcaagaactcccagaa
aatgtcaaatgcatgatggactgtgaggctgcagatattttacaaggaatccaagatcag
atgaccatattatccaaagatccagaatttaaactccccccatcatttgacagggggctg
ctgtatgccaaaagggttgaccattacacaaatcccccgtctgttagacaagttcttcag
actctcaagaaatatggtgtctctgatggcgagatatgcgtcattgccaatgtttgtcca
gaacttgtagatgaagtttttgctctggtcccatccttgaagaataagagaagcaagctc
agcgaacccctcaaagatgtactagttgagctagctaagcttaagaagtcaactagctta
gaaagtcaaatgaaaagtgctgaagctggcaaccctggtaatgtcgggggcctgggagta
gtggatttatag

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