Carya illinoinensis (pecan): 122279008
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Entry
122279008 CDS
T08745
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122279008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122279008
03019 Messenger RNA biogenesis [BR:
cill03019
]
122279008
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122279008
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122279008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_12
zf-CCCH_3
FapA_N
Torus
Motif
Other DBs
NCBI-GeneID:
122279008
NCBI-ProteinID:
XP_042945179
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All DBs
Position
10:complement(10696803..10716869)
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AA seq
680 aa
AA seq
DB search
MEDSEGGLSFDFEGGLDTVPAAASSATSGPHVINSDTAFGGSAANAATAGPGAAVAVADP
AAGGNHPAGRRGFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDC
VYKHSNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYNSSNR
FFQQRNGGFPQQAEKPQFTQGPNTTNQGGIGKTSTNESAIVQQQQQSQQQVSQNQTQNIP
NGLPNQTSRGALPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN
VILIFSVNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFQKT
RHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYIEPDSELMAISLAAESKREEEKAKG
VDPENGENPDIVPFEDNEEEEEEESEEEEDSFSQVPGAATQGRGRGRGIVWPPHMPLARG
TRPMPGTQGFPPVMMGADGLSYGTITPDGFPMPNLFGVGPRAFSPYGPRFSGDFTGPASG
MMFRGRPSQHFPAGGFGMMMGPGRAPFMGGMGVAGTNPARPGRPVGMPQMFPPPPLPSSQ
NINRIVKRDQRDNDRSDRYSAGSDHIKGQEMPSLGGRPDDEAQYHQGFKARREDQHGGGN
NFRNDDSESEDEAPRRSRHG
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcggagggaggtctcagcttcgacttcgagggcggcctcgacaccgttccc
gccgccgcctcctccgccacctcggggccccatgtaataaactccgatactgccttcgga
ggatcagccgccaacgcggccaccgccggccccggggctgccgttgcagttgctgacccc
gccgcggggggtaatcatcctgcggggcggcggggcttccggcagacggtgtgccggcac
tggctccgcagcctctgcatgaagggcgacgcctgtggcttcctccaccagtacgacaag
tcgcggatgcccatctgccgcttcttccggctctacggcgagtgccgggagcaggactgc
gtgtacaagcatagcaatgaagatatcaaggagtgtaacatgtacaagttgggtttttgt
ccaaatggtcctgactgtcggtacaggcatgcaaaactgcccgggcctccacctcctgtg
gaagaagtccttcagaagattcagcaattaaattcttacaactacaactcttcgaacaga
ttttttcaacaacggaatggtggtttccctcaacaagcagaaaaacctcaatttactcaa
ggtcccaacaccaccaatcaaggagggattgggaaaacttcaacgaatgagtctgctatt
gtccagcagcagcaacagtctcagcagcaggtcagccagaatcagacacaaaatattcca
aatggcctgcctaatcagacgagcagaggtgctctacctttgccccaaggaatatctagg
tattttattgttaaaagttgcaaccgtgaaaatttggaattatctgtacagcaaggagta
tgggcaactcaaaggagcaatgaggctaaactgaatgaagcttttgactctgctgagaat
gtgattttgattttctctgtcaaccggactcggcatttccagggttgtgcaaagatgaca
tccaagattggtggttctgtcggtgggggcaattggaaatatgcacatggaactgcacat
tatgggcggaatttctctgtcaaatggttaaagttatgcgaattgtccttccaaaaaact
cgccatctacggaatccattcaatgaaaatttaccagtaaagataagtagagactgtcaa
gagctagagccttctgttggtgagcagttggcttccttgctttatattgagccggatagt
gaacttatggcaatttcacttgcagctgagtcaaaacgagaggaggagaaagcaaaggga
gttgatccagaaaatggagagaatccagacatcgtcccatttgaggataatgaagaagag
gaagaggaagaaagtgaagaagaggaggatagcttcagccaggttcctggggcagcaact
cagggcagaggaagaggcaggggaatcgtgtggccccctcacatgcctctagcacgtgga
accagacctatgcctgggacgcagggttttccccctgtaatgatgggtgctgatggatta
tcttatggaactattacacctgatgggtttcctatgccaaaccttttcggggttggcccc
cgtgctttttcgccatatggtcctagattttctggtgattttacaggtccagcctctggc
atgatgtttcgtgggcggccttcgcaacattttccagctggtggatttgggatgatgatg
ggtccagggcgtgctccctttatgggagggatgggggttgcaggtacaaatccagctcga
cctggtcggccagttggtatgccccaaatgtttccaccacccccacttccatcctctcag
aatatcaatcggattgtgaagagagaccagagggataatgatcgaagtgacaggtatagt
gcaggttcagatcacatcaagggtcaagagatgcctagtctgggcggacgaccagatgat
gaggcacagtatcatcaaggattcaaggctcgccgtgaagatcaacatggtggtggtaat
aactttagaaatgatgacagtgaaagtgaggatgaggcgcctaggcgatcaaggcatggg
tag
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