Carya illinoinensis (pecan): 122279021
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Entry
122279021 CDS
T08745
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cill01009
]
122279021
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122279021
Enzymes [BR:
cill01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
122279021
Protein phosphatases and associated proteins [BR:
cill01009
]
HAD phosphatases
Fcp/Scp phosphatases
122279021
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
122279021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
122279021
NCBI-ProteinID:
XP_042945200
LinkDB
All DBs
Position
10:complement(1847298..1851651)
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AA seq
664 aa
AA seq
DB search
MAKDQSISVKDAVYKLQLSLLEGIQDENHLFAAGSLMSRSDYEDVVTERSIVNLCGYPLC
RNSLPADRPRKGRYRISLKEHKVYDLQETYMYCSSSCAVNSQAFAKSLQDERCSVLDLDK
LNEVLRLFGNLSLDSKDGLGKNGDLGLSGLTIQEKPKTKVGEVPLEEWVGPSNAIEGYVP
QRERSSKSSLLKNPKGGSKARHTKLNSEKDFVINEMDFISTIITEDEYSVSKMPSGSTKT
PSDDKIREPKGKVNCKDLEDQVAIREKPSAPTKNPGERKSRESKGEESRMATKGEYIITG
LPSTSNPCPTSSSVSTAEAEEEAADEKAAMSKETTCKSSFKPSGMKKSGRTVTWADEKVD
GSGDGNLCEVSDMEDKKEAPERLSGKDVEDNDEKLRFDSAEACAIALNEAAEAVASGESD
ARDAISEAGIIILPHQGDVDEGELMDDIDMLESEPTPLKWPRKPGVPHSELFNPEDSWYD
APPEGFNLTLSPFAKMWMALFAWTTASSLAYIYGKDESFHEEYHSVNGREYPNKIVLADG
RSSEIKQTLAGCLARALPGLIADLRLPTPISILERGLGRLLDTMTFLDALPAFRSKQWQV
IVLLFIEALSVCRIPALTSHLTNRRMFLTKVLDGAQISVEEYEIMKDLMIPLGRVPHFSS
QSGA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggatcaatcaatctcagtgaaagatgctgtttacaaactgcaactttccctc
cttgaaggcatccaagatgaaaaccatctttttgctgctggatctctgatgtctcgcagt
gactatgaagacgttgtgactgagcgttcaattgtgaacctctgtggctaccctctttgc
cgcaattctctgccagctgatcgccctcgaaagggacgctaccgcatttccttgaaggaa
cacaaggtttatgacctacaggagacatacatgtattgctcttcaagctgtgctgttaac
agtcaagcttttgctaagagcttgcaagatgaaagatgctcagttttggacttggataaa
cttaatgaggttttgaggttatttgggaacttgagtttggactccaaggatggtttggga
aagaatggggatttaggattgtctggcttgacaattcaggagaaaccaaaaaccaaggtt
ggggaagtgcctttggaggagtgggttggtccatcaaatgcaattgaaggctatgttcca
cagagggaacgcagttccaagtcctcacttttgaaaaatcccaaaggagggtccaaagct
aggcataccaaattgaatagtgaaaaagacttcgtcatcaatgagatggacttcatcagt
actataatcactgaagatgaatatagtgtctcaaaaatgccatcaggttcaacaaagact
ccttctgacgataaaataagggaaccgaaaggaaaagtgaattgtaaagacttggaggat
caagttgccatacgtgaaaaaccatccgctcccacaaagaatcctggtgaaaggaaatca
agagaatcaaaaggggaagagagtagaatggccaccaaaggtgagtatatcatcacaggg
ttgccttcaacttcaaacccctgcccaactagttccagtgtaagtactgcagaagcagaa
gaggaagccgccgatgagaaagcagctatgtcaaaggaaactacgtgcaaatcctctttt
aaaccttcgggtatgaaaaaatctggtcgcactgttacctgggctgatgagaaagttgat
ggcagtggggatggaaatctttgtgaggttagtgacatggaagataaaaaggaagctcct
gaaagattaagtggtaaagatgtggaagataatgatgaaaagttacgctttgactcggca
gaagcttgtgcaatagcattaaacgaggcagcagaggctgttgcttctggagaatctgat
gccagagatgccatctctgaagctggaattattatactgccacatcaaggagatgtagat
gaaggggaattgatggatgatattgatatgctcgaatccgaaccaactcctttaaagtgg
ccgagaaaacctggggttccacattctgagttgtttaaccctgaagattcgtggtatgat
gctccgccagagggtttcaatttgactttatcaccttttgccaaaatgtggatggctctc
tttgcatggacaacagcgtcttctttggcttatatatatgggaaggatgagagttttcat
gaagagtaccattccgttaatgggagggagtaccccaataagattgtcttggcagatggt
cgttcttctgaaataaagcaaactcttgctggttgtcttgctcgggctttgcctggacta
attgcggatttgagactgccaacaccaatatctattttggagcgaggattggggcgcttg
ttggatacaatgacttttttggatgcacttccagctttcagatcgaaacagtggcaagtg
attgttcttctgtttattgaagctctctctgtttgtaggatccctgcacttacctcacac
ttgactaataggaggatgtttttgacaaaggtgttggatggtgcccaaataagtgtggaa
gagtatgagattatgaaggatctaatgattcctctcggcagggttcctcatttctcatca
cagagtggagcttga
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