Carya illinoinensis (pecan): 122279136
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Entry
122279136 CDS
T08745
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122279136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122279136
03019 Messenger RNA biogenesis [BR:
cill03019
]
122279136
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122279136
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122279136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
122279136
NCBI-ProteinID:
XP_042945443
LinkDB
All DBs
Position
10:complement(8372125..8381456)
Genome browser
AA seq
982 aa
AA seq
DB search
MASTGSENRENPRNLATVTKVVATELPPQKPTQTILDRFKALLRQRDDELRGSAEDDTVT
PPSAEEIVHFYDLLLSELTFNSKPIITDLTIIAGDQKEHGKGIAEGICARILEAPVEQKL
PSLYLLDSIVKNIGREYVTYFSSCLPEVFCEAYRQVHPNQHNAMQHLFGTWSAVFPPSVV
RMIEAQIQFSPSANDQSSGLTPSRASESPRPTHGIHVNPKYLRQLEHSAVDGNIQQARET
SALKLYGQKPSIGYDEFDLGQAELLSSQAGDPRLSSTGNAVEEFAADHSSRRLADRSSTA
HLKFKYGLGRATGGDEEMSSLHGKHYAGSNHTLQTRTMYNVSNGNEHQQPRALIDAYGND
TGKRSFNDKPLLGQRHDINGIDNKVFTPSWQNTEEEEFDWEDLSRPLVDRSRSNDFLSTS
VPPFGRVSVRPAFGVQRASPLMANQAQLPALDNSSMITEDAVPLLSFGRGSMGKIPGFRA
ERSHILDSRYPQEAWNMPPHLAKGRGRNFHLPLRASGMSSSDGEKSPVDKLPDNDSKIRG
PQSIISRFGSSNLDSISVEVQPAVVPASMGARPLLNVHNSRPPSLQPIFSQKRSQFDLIN
ASNNVNNCSPNGYLYMPDQQLDGFGNKELGAMKLSQLPNQRAGLISLNQRNQVQVTPLQL
QFLPSQGAHPSSAAVVPPHLVAPRLNHGYKPQMHGAAVSTVLSKPVTGAQLVFPVQNIPN
SSLHLQGGTLPLPPGVPPTSSQMIPLTQNAVPVVSNQQTSISGLIGSLMAQGLVSLTRPT
PLQDSVGVEFNADLLKVRHESAISALYTDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRM
SKNRKQKPSRKWFVSVSMWLSGAEALGSEAVPGFLPTEVILEKKDDEEMAVPADDDQNAC
ALCGEPFDDFYSDETEEWMYKGAVYLNMPGGLTAGMDRSQLGPIVHAKCRSESSVVSPED
FRQDERGITAEGSQSKRMRLIS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcatccacgggctcagagaaccgagaaaacccaagaaacctagccacggtgacgaag
gtggtggccactgagctcccgcctcagaaaccaacgcagactattcttgaccggttcaag
gctctgctgaggcagcgcgacgacgagcttaggggttcggccgaagacgacactgtcacg
ccgccgagcgcagaggaaatcgtgcatttttacgatctattgttgtcggagttaacattc
aactcgaagcccattatcacggatctcaccataatcgctggcgaccagaaggagcacgga
aagggcattgccgaaggcatttgcgctcggattctcgaggccccagttgaacaaaaattg
ccttcattatatcttttagatagtattgtcaagaatattggcagagaatatgttacatac
ttctcttcttgtctgccagaggttttttgtgaggcatacaggcaagtacaccctaatcag
cataatgccatgcagcatctctttggcacctggtcagctgtatttccaccttctgtcgtt
cgaatgattgaggcacaaatccaattctctccttcagcgaacgatcaatcatctggttta
actccctcaagagcttctgaatctcctcgacccacccatggcatacacgtcaatccaaag
tatctgcgtcagttggaacattcagctgtggatggtaatattcagcaagctagggaaacc
tcagctttaaaattgtacggtcaaaaaccttccattgggtatgatgaatttgatttgggt
caggcagagcttttatcctcacaggctggagacccaagattgagctcaacaggaaatgca
gttgaagaatttgcagcagatcattcttctagaaggcttgctgataggagctccacagct
catcttaaattcaagtatggactaggtagagcaactggtggcgatgaggaaatgagtagc
ctgcatggaaaacactatgccggtagtaatcataccctacaaactagaaccatgtacaac
gtcagtaatggaaatgagcaccaacaaccaagagctttgattgatgcttatggaaatgac
actgggaagagatcttttaacgataagcctctgcttggtcagcgccatgacataaatggt
atagacaataaggtttttacaccatcatggcagaatactgaagaggaagagtttgattgg
gaagatctgagccgccctttagtagaccgtagcaggagcaatgatttcttgtcaacatct
gttccaccttttggaagagtcagtgttaggcctgcctttggagtacaaagagcttcccct
ctaatggctaatcaggctcagcttcctgcactggacaactcttctatgattactgaagat
gcagtccccttactaagttttggtcgtggatcaatggggaagataccagggttccgagct
gagagaagtcacattctggattctcgctatccacaggaggcctggaatatgcctccccat
cttgccaaaggaagaggaaggaatttccatttgcccttacgggcaagtggtatgtcttca
tcagatggtgaaaaatctcctgttgacaagcttcctgataatgattcaaaaattcgcgga
cctcaatctattatatcaagatttggttcttccaatcttgactctattagtgttgaggtg
caaccggcagttgtaccagcatctatgggtgcaaggcctctgctaaatgtgcataattct
cgcccaccatccctgcagcctattttttcacagaagaggagccaatttgacttgataaat
gctagcaataatgtcaataattgtagtccaaatgggtatttatatatgcctgatcagcag
ttggatggttttggaaacaaggagctgggtgctatgaaactgtcacaattacctaatcag
cgtgcaggactaatttctctgaatcagcgaaatcaggttcaagtcactcctttacagcta
caatttcttccatcccagggggcacatccatcttcagcagctgtagtgccacctcattta
gtggcaccacgtttgaatcatggatacaaaccacaaatgcatggtgctgctgttagcaca
gttctgtcaaaacccgtaactggtgctcagttggtgtttcctgttcaaaatatcccaaat
agctcactacatttacaggggggaaccttgccactacctccaggtgtccctcccacttca
tcgcaaatgatacctctcacacaaaatgcagttccagttgtctctaatcagcagacaagc
atttctggattgatcggttctctcatggctcagggtttggtctcattgaccagacccacg
cctttacaggattccgtgggagttgagtttaatgctgaccttcttaaggtgcgccatgag
tctgcaataagtgccctatatactgatctcccaagacagtgcacaacctgtggcctccgg
ttcaaatgtcaagaagagcacagtagtcatatggattggcatgtaaccaagaatcgaatg
tctaagaaccggaagcagaaaccttctcgtaagtggtttgtaagtgtgagcatgtggctc
agtggtgcagaggcattgggaagtgaagcagttcctgggtttttgcctactgaggtcatt
ctagaaaagaaggatgatgaagaaatggctgtgcctgctgatgatgaccagaatgcatgt
gcattatgtggggagccttttgatgatttttacagtgatgagacagaagagtggatgtat
aagggggctgtctacttaaatatgcctggcggcttgacagcaggcatggatagatctcag
ttgggtcctatagtgcatgctaagtgccggtctgaatctagtgtggtttccccagaagat
tttagacaagatgaaaggggaattactgcagagggtagtcaaagcaaacgaatgcggctt
attagttag
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