Carya illinoinensis (pecan): 122279137
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Entry
122279137 CDS
T08745
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cill01009
]
122279137
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122279137
Enzymes [BR:
cill01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
122279137
Protein phosphatases and associated proteins [BR:
cill01009
]
HAD phosphatases
Fcp/Scp phosphatases
122279137
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
122279137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
DSRM_2
Motif
Other DBs
NCBI-GeneID:
122279137
NCBI-ProteinID:
XP_042945444
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All DBs
Position
10:4769049..4778932
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AA seq
959 aa
AA seq
DB search
MDMYKAVVYQGEELLGEVEMYPVENNNDNSMIEAKEIRISYFSQASERCPPLAVLHTIAS
SGICFKMESKSSQSQDSPLYLLHSSCFKENKTAVIAVGGEELHLVAMSSRNTDKQYPCFW
GFNVASGLYDSCLVMLNLRCLGIVFDLDETLIVANTMRSFEDRIDALQRKINSEVDPQRI
SGMLAEVKRYQDDKHILKQYAENDQVIENGKVIKSQSEVVPALSDNHQPIVRPIIRLQEK
NIILTRINPQIRDTSVLVRLRPAWDDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLD
PDLNLINSKELLARIVCVKSGSRKSLFNVFQDGLCHPKMALVIDDRLKVWDEKDQPRVHV
VPAFAPYYAPQAEANNAIPVLCVARNVACNVRGGFFKEFDEGLLQKISEIAHEDDIKDIP
SPPDVSNYLVSEDDTSASNGNRDPLSFDGMADAEVERRLKDAISASSTISSAVANLVPRL
VPAIQNTITPASSSIPLTTTQVLSHFPSIQFPQPASLVKPAGHIGPQEPSLQSSPAREEG
EVPESELDPDTRRRLLILQHGQDTREHASTEPPFPVRPPIQVPAPRVQSRGGWFPVEEEM
GPQQLSRAGAKEFPLDPESMHIEKHGPRHPPFFPKVESSINSDRVLRENQRLPKEAFHRD
DRLRLNQTLSSYHSFSGEDIPLSRPSSSNRDLDFESGRGVPNEETPAGVLQDIAMKCGTK
VEFRPALIGSMELQFSMEAWFAGEKIGEGIGRTRRDAQRQAAEGSLKNLANIYMSRIQPD
SGSIHGDWSILNANGNGFLGSVNSFGDQPLSKEEPVSFSAASEPSRPLDPRLEGSKKSMG
SVSALKELCTMEGLDVAFQPRPPPSGNSVQNDEVYAQVEIDGQVLGKGIGLTWDEAKMQA
AEKALGSLRSMLGQSNPKRPDFSRSLHGISNKRMKPEFSRVLQRMPSSARYAKNAPPVP
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggatatgtataaggcggtggtgtatcaaggggaagagttactgggggaggtagagatg
tacccagtagagaacaacaacgacaactcgatgattgaagcgaaggaaatcagaataagt
tacttttcgcaagcgagtgagaggtgtccaccactggcagtgctccataccattgcatct
agtgggatttgcttcaaaatggaatcaaagtcctcgcagtcacaggactcgccgctctat
cttttgcactcatcatgtttcaaggagaacaagactgcggtaatagcagttggaggggag
gaacttcatttggttgctatgtcttcgaggaatactgacaaacagtatccatgtttctgg
ggattcaatgttgcatcaggactttatgattcttgtctcgtcatgctgaaccttagatgt
cttggaatagtatttgatcttgatgagacgctcatagttgcaaatacaatgcgctcattt
gaggataggattgatgccctacagcggaaaataaacagtgaagtggacccacaacgcatc
tctggcatgctggcagaggtcaagcgttatcaagatgacaagcatatattgaagcaatat
gctgaaaatgaccaggttattgaaaatggaaaggtgataaaaagtcagtctgaggttgtt
ccagctttgtcagataaccatcaacctattgttcggccaattatacggttacaggagaag
aacattattctgactcgcatcaatccacagattcgtgatacaagtgttcttgtgaggttg
agacctgcatgggatgatctccggagctacttgatagcacgagggcgcaagcgttttgag
gtttatgtttgcacaatggctgaaagggattatgctttagaaatgtggaggcttcttgat
ccagatttaaatttgataaactccaaggaattattggctcgcattgtctgtgtcaagtct
ggttcaaggaagtcactgttcaatgtctttcaagacggcttatgccatcctaagatggca
ctggtcattgatgatcgcttgaaagtgtgggatgagaaagaccaaccacgggtccatgtt
gttcctgcatttgctccatactacgctccccaagctgaggctaataatgctatacctgtt
ttgtgtgtggcgagaaatgttgcctgcaatgttagaggcggttttttcaaggaatttgat
gaaggtcttctacaaaagatttctgaaattgctcatgaagatgatattaaagatattcct
tctccacctgatgtgagcaattatttagtctctgaggatgatacttctgcttcaaatggc
aacagagatccactttcttttgatggcatggcagatgcagaagttgaaagaagactgaag
gatgcaatatctgcttcttcaacaatctcttcagcagttgctaatctagttccaaggctt
gttcctgctattcagaatacaataacaccagcatctagctcaattccactcacaacaact
caagttttgtcacactttcccagcattcagttccctcagccagcttcacttgttaaacca
gcaggtcatattgggccccaagaaccaagcttgcaaagttctcctgctagagaagagggt
gaggtaccagaatcagaattagatcctgatacaaggcggaggctactcatattgcaacat
gggcaagatacaagagagcatgcatcaactgaacccccatttcctgtcagacctccgatt
caagttcctgctccccgggtgcaatcacggggtggctggtttccagtggaggaagagatg
ggcccacaacagctgagccgagcaggagctaaagaatttcccttagatccagaatcaatg
catattgagaagcatggacctcgccatcctccttttttcccaaaggttgagagttcaatt
aattctgatagagttcttcgtgaaaatcaaagattgccaaaagaggcatttcatagagat
gatcggttgagattaaaccagacactgtccagttatcattctttctcaggtgaggatatt
ccattgagtcgaccatcttccagcaacagggatctagactttgaatctggacgaggtgtt
ccaaatgaagaaactccagctggagtgttacaggatatcgcaatgaagtgtggaaccaag
gtggagttcagaccagctttgattggtagcatggaattgcaattttctatggaggcttgg
tttgcgggggaaaaaattggtgaagggattggtagaacgaggagggacgctcaacgtcag
gctgctgagggttctcttaagaacttggctaatatatatatgtcccggattcagcctgat
tctgggtctattcatggggattggagtattcttaatgcaaatggcaatggttttttgggt
agtgtgaattcttttggggatcagccattgtccaaagaggagcctgtctcattttcagct
gcatctgaaccatctaggcctctcgaccctcggttggaaggctctaagaagtcaatgggt
tcggtctctgcactgaaagaattatgcacaatggaaggcctcgatgtggcttttcaacct
cggccgccaccttctggtaattcagttcagaatgatgaagtctatgcacaggttgaaata
gatggacaggtcttagggaaagggatcggtttgacatgggatgaggctaagatgcaggct
gctgaaaaggcacttggaagtctacgatcaatgcttggtcaatctaatccgaagcggcca
gatttttctcggtcattgcatgggatttcgaataaacgtatgaagccggaattttcacga
gttctgcagcggatgccttcttctgctagatatgccaagaatgctcctcctgttccctaa
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