Carya illinoinensis (pecan): 122279167
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Entry
122279167 CDS
T08745
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cill04812
]
122279167
Cytoskeleton proteins [BR:
cill04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
122279167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Katanin_con80
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
WDR90_beta-prop_4th
eIF2A
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
122279167
NCBI-ProteinID:
XP_042945489
LinkDB
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Position
10:complement(23230716..23243012)
Genome browser
AA seq
782 aa
AA seq
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MVKRGYKLQELVAHSASVNCVNIGKKACRHFITGGDDHKVNLCAIGKPNSVMSLCGHTSP
VESVAFDSSEVLVLAGASNGVIKLWDLEEVKMVRTLTGHSSNCTAVEFHPFGEFFASGSM
DANLKIWDIRRKGCIHTYKGHTQGISTIKFTPDGRWVVSGGFDNIVKVWDLTAGKLLHDF
KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGVRAIAFHPDGRT
LFSGVEDSLKVYSWEPVICHDAVDMGWSTLGDLCIHDGKLLACSYHRNSVGVWAADISRI
GPYAANSIPDQNDSMEKKINLNFPGSHSSEDLGSGIRSTSGLRCMSPDCETKEIKNIYVD
SAGGKLVTSPRVESFNSPKVVTPKEISCTPTQKESPVAGLNARSNEKALDKKCIVPSTVA
TDSAGRRDAVNSGKEMITFSRTKRGMLLKPAHARRTSNSKVEVERLPETVESGNLSNVSS
NLDSAINSKFQSKLASEDGCRKSCEEEHSHIKGVTENLERILSPQKPCSQESCDESLSCN
KGLSPVKIVNGVAVVQGRTRSLVERFERRESVNSNEEQASTVSCVIPEMDTTPTMLKGVP
KTSGRDWTSTNDRDVTDDLMQTHEVFLSTLRSRLTKLQVVRHFWERNDIKGAIGALRKLP
DHSVQADVASVLMEKMEIITLDLFSCLLPVLLGLLDSKVERHANVSLEMLLKLVAVFGPV
IYSTVSAPPTVGVDLQAEQRLSCCNQCFIQLQKIQKILPLLVRKGGLLAKSARELNLVLQ
ES
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagcgtggttataagctacaggaacttgtggctcattcagcgagtgtgaactgc
gtgaatattgggaagaaggcgtgccgtcattttatcactggcggggatgaccacaaagtt
aatctttgcgcgattgggaaacccaattccgtaatgagcctgtgtggccatacaagtcca
gttgaatcggttgcttttgattcgtcagaagttttggtgcttgctggagcttctaatggt
gtgataaaactctgggatttggaggaagtaaagatggttcgaactcttactggacacagt
tccaactgcactgctgttgaatttcatccattcggagagttctttgcatctggttccatg
gatgccaatctaaagatctgggatattagaaggaaaggatgcatccacacatacaagggt
catactcaaggcattagtacaatcaaattcactcccgatggtcgatgggtagtttctggt
ggatttgataatattgtaaaggtgtgggatctaacagctggaaagctcttgcatgatttt
aagttccatgaaggacatattcgatcgatagattttcacccacttgagtttctcttagcc
acgggttcagcagacagaactgttaaattttgggatctggaaacctttgaactgattggt
tctgccagacctgaggctacaggagtacgcgcaattgcttttcatcctgatgggagaact
ctattttctggggtggaggatagtttgaaggtttactcatgggaacctgtaatatgtcat
gatgctgttgatatgggatggtcaacgcttggtgacctatgcattcatgatggaaaactt
ctggcttgctcataccatcgaaattctgttggagtttgggcagcagatatatcgcgtatt
gggccatatgcagctaattctatacctgaccaaaatgactctatggaaaagaaaattaac
cttaatttcccaggaagtcattcttctgaggatttaggaagtggtatccgatcaacttca
ggtttgcggtgcatgtctcctgattgtgaaacgaaagagataaagaacatatatgtggat
tctgctggtgggaagcttgttacctcaccaagagttgagtccttcaattctccaaaagtg
gtaaccccaaaggaaattagttgtacgccaactcagaaggaaagtcctgtcgcaggcttg
aatgcaagatctaatgaaaaagcacttgataagaaatgcattgtgcctagcactgtagct
acggacagtgctggcagaagagatgccgtcaattctggaaaagaaatgataaccttttca
aggacaaagcgtggtatgttgctcaaaccagctcatgctcggaggacatcaaatagcaaa
gttgaggttgagaggctgccagaaactgttgaatctggaaatttgagcaatgtgtcgagc
aatttagatagtgcaataaattcaaaattccaatccaaacttgcatcagaagatggatgt
agaaaatcatgtgaggaagaacattctcatatcaaaggtgttactgagaatcttgaaaga
attttatcaccacagaagccctgtagtcaggaaagctgtgacgaatccctcagttgcaac
aaagggctaagccctgttaaaattgtcaatggagttgcagttgtacaaggaaggactcgc
tcactggttgagaggtttgaaagaagagagagtgtcaatagcaatgaagagcaagcatct
acagtgtcgtgtgtgatacctgaaatggatacgactcccacgatgctgaaaggagtacct
aaaacttctggaagggactggacttccacaaatgatagggatgttaccgatgatctcatg
caaactcatgaagtattcctgagtacacttcgctcacgcttaacaaaattacaggtggtg
cgacatttttgggagcggaatgatatcaaaggtgccattggtgcgctaaggaagctgcca
gatcattctgtgcaagcagatgtggccagtgttcttatggagaaaatggagattattacc
ttagatctgttttcttgcttgcttcctgtgcttttgggtttgcttgatagcaaggtagaa
aggcatgcaaatgtgtcattggagatgctattgaagcttgtagcagtgttcggcccagtg
atatactcaaccgtttcagcgcctcccactgttggtgttgatcttcaggcagagcaaagg
ctttcctgctgcaaccagtgttttatccagctgcaaaagatccagaaaattctcccgttg
cttgtaaggaagggcggattgctggcaaaatctgctcgggaattgaatctagttcttcaa
gaatcatga
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