KEGG   Carya illinoinensis (pecan): 122279168
Entry
122279168         CDS       T08745                                 
Name
(RefSeq) cullin-4-like isoform X1
  KO
K10609  cullin 4
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03420  Nucleotide excision repair
cill04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122279168
  09124 Replication and repair
   03420 Nucleotide excision repair
    122279168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cill04121]
    122279168
   03400 DNA repair and recombination proteins [BR:cill03400]
    122279168
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cill04147]
    122279168
Ubiquitin system [BR:cill04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     122279168
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      122279168
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122279168
Exosome [BR:cill04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   122279168
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 122279168
NCBI-ProteinID: XP_042945491
LinkDB
Position
10:complement(12025699..12043184)
AA seq 813 aa
MSLPTKRSSTTGSDATFSPPQFPLMKKAKSQAVPLDSKNGLHHQYFTSTTNNNVIFDSSS
MALEEDLKSDDSSAPALSVAANLSRKKAQPPHPTKKLVIKLVKAKPTLPANFEVDTWAKL
KSAISAIFLKQPNPIDSEILYQAVNDLCLHKLGGNLYQRIEKECELHISSALKSLVGQSP
DLVVFLSLVERCWQDLCDQMLLIRGIALYLDRTYVKQAPNVRSLWDMGLQLFCKHLSCYP
EVKHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFSALGIYMESFEKPFLDCTSEFYAAE
GMKYMQQSDVPDYLKHVESRLHEEHERCLIYLDASTRKPLIASAEKQLLEHHISAILDKG
FMMLMNGDRIEDLQRMYSLFSRVNALESLRLALSSYIRGTGQRVVMDEEKDKDMVSSLLE
FKALLDKIWDESFSKNEAFCNTIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEE
ELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQF
TNKLEGMFKDVELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHE
LNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAE
KLSFQDIKDSTGIEDKELRRTVQSLACGKVRVLQKLPKGRDVEDNDSFVFNDGFTAPLYR
IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFP
IKPADLKKRIESLIDREYLERDKSNPQIYNYLA
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgtctctccccaccaaacgctcatccacaaccggtagtgatgccaccttttctccccct
cagttcccccttatgaagaaggccaagtcccaagctgtccccctcgactccaaaaacggc
ctccaccaccaatacttcaccagcaccaccaacaacaacgtcattttcgattcctcctcc
atggccctcgaagaagatctcaagtccgatgattcctccgcccccgctctctcagttgcc
gccaatttgtccaggaaaaaggcccagccgccccatcccaccaagaagctcgtcatcaag
ctcgtcaaagctaaaccgacacttcctgcaaattttgaagtggatacatgggcaaagctg
aagtcagctatatctgctatatttttaaagcaaccaaatcctattgactcagagatactt
tatcaggctgttaatgatctttgtctgcacaaattggggggaaatctttatcaacgaatt
gaaaaggagtgtgaattgcacatatcttcagcgttgaaatccttggtaggtcaaagccca
gacttggtggttttcttatcacttgtcgagagatgctggcaggatctttgtgatcaaatg
ttgttaattcgcggtatagccttgtatctggatagaacatatgtgaagcaagcacctaat
gtacgatcattgtgggacatgggattgcagcttttttgcaaacatctttcatgttatcca
gaagtcaaacacaaaactgtcactggccttttaagaatgattgagcgggaaagattaggt
gaagcagtggataggactcttcttaatcatcttttgaagatgttttctgctctaggaatt
tacatggaaagctttgagaagccatttcttgattgtacatctgagttttatgctgctgaa
ggcatgaaatacatgcaacaatcagatgtgccagattatttgaagcatgtggagtcaagg
ttgcatgaggaacatgaaagatgtttaatatacctggatgcaagtacaagaaagccatta
attgcaagtgcagagaagcagctccttgaacaccatatatctgccattcttgataagggg
ttcatgatgctaatgaatggggaccgtattgaggacctccagaggatgtattcactgttt
tcaagggtcaatgcccttgaatcactaaggctagcccttagctcgtacatacgtggaact
gggcagcgtgttgtcatggatgaagagaaagataaagatatggtttcctccctcttagaa
tttaaggccctgcttgacaaaatatgggatgaaagcttttccaagaatgaggcattttgc
aacaccattaaggatgcatttgagcatctcatcaatcttcgtcagaaccgacctgctgag
ctgattgcaaagtttctagatgagaagcttcgtgctgggaacaagggtacctcggaagag
gaattggagggtactcttgataaagttttggttctattcagatttatccagggcaaggat
gtgtttgaagcattctacaagaaggatcttgcgaaaaggctgcttttgggaaagagtgct
tctatcgatgcagagaagtccatgatctctaagctgaagaccgagtgtgggagccaattt
acaaacaaacttgaagggatgttcaaagacgttgaattatcaaaagagataaatgaatcc
ttcaaacaatcatcccaggccaggacaaaactcccatctggtattgagatgagtgtgcat
gttttaacaacagggtactggccgacatatccacctatggatgtcagacttcctcatgaa
ttgaatgtctaccaggacattttcaaggagttctacctgagcaagtacagtgggaggcgc
ttgatgtggcaaaactcattaggtcactgtgtgttaaaggctgaatttcctaaaggtaaa
aaggaactggccgtgtcattatttcagactgttgttttgatgctctttaatgatgcggag
aagctaagttttcaagatattaaggactccactgggattgaggataaagaactgaggagg
actgtgcagtcccttgcatgcggaaaagttcgagtcttgcaaaagttgccaaagggtaga
gatgtggaggacaatgattcatttgtgttcaatgatggattcacggcacctctttaccga
ataaaggtaaatgcaatccagatgaaggaaacagtagaggagaacacaagcaccactgag
agagtattccaggaccgtcaatatcaggttgatgccgctattgttcgaataatgaagaca
aggaaagtgctgagtcacacacttctgataactgaactcttccaacagctcaagtttccg
ataaagccggctgatttaaagaaaagaattgaaagcctcattgacagggagtacctggag
cgtgacaagagcaacccgcagatatacaattacttggcgtaa

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