Carya illinoinensis (pecan): 122279257
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Entry
122279257 CDS
T08745
Name
(RefSeq) transcription initiation factor TFIID subunit 12 isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122279257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122279257
03036 Chromosome and associated proteins [BR:
cill03036
]
122279257
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122279257
Coactivators
SAGA/TFTC/STAGA complex
122279257
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122279257
STAGA complex
122279257
TFTC complex
122279257
SAGA complex
122279257
SLIK complex
122279257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
Histone
CBFD_NFYB_HMF
DUF5814
Motif
Other DBs
NCBI-GeneID:
122279257
NCBI-ProteinID:
XP_042945680
LinkDB
All DBs
Position
10:complement(872283..877892)
Genome browser
AA seq
541 aa
AA seq
DB search
MEQQTPPTAVAVTASASQPPDAPTQPPQSQPTPAPQPLSSLATPSSSTPNPNPNPNPTTN
QIPNSKPSSTSTSSLPPHSLPSPAQPPPAPRPPSTFSRTLPQHQQHQQPHYPHFSSLPSS
TSSASSSASPSIAPPPPRGGVAIGVPAHHASTSPQPTPFSSSFGQHFGGLGRSPVHAPES
APNSNVSQARPAIQGVQGMGMLGSLGSSSSQIRPGGIPAHHQQRPVQSSLRPSSSPTNQP
SISQNMQGHGLLRISSVGSPGSPSPNTSQSMQSINQPWLSSGSQGKPPLPSPSNRLQVNS
QMQQRAHLPQQPQPHPVPAASQQQHMSSLQPQQPSPSNQLQEHYGQQFAPSRVQQSVPQQ
QQITRVHVSGNQKPSSLAMLQPNTVQSGPQNRTAIVETDESCNRILTKRSVQELVSQVDP
LEKLDPEVEDILVDIAEDFVDSITTFGCSLAKHRKSNTLEAKDILLHLERNWNMTLPGFG
GDEIKSYRKLVTNDIHKERLAAIKKSIVATETATKISAGQAAGSVKGNLAKTPANALAPQ
T
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaaaccccaccaaccgccgtcgccgtcaccgcctccgcctcgcaaccccct
gacgctccaacccaaccaccacagtcgcagccaacaccggctccgcagcctctatcgtct
ctcgcaactccgtcctcatctaccccaaatcctaaccctaaccctaatccgaccacaaac
caaatccctaattctaaaccatcatccacctccacctcctcactccctccccactctctc
ccaagtcccgcacagccaccaccagcaccccggcctccctccacgttctccagaaccctg
ccgcagcaccaacaacatcaacagccccactatccgcatttctcttcgctgccgtcttcg
acttcttctgcatcttcgtctgcgtctccctcaatcgcacccccaccgccgaggggtggc
gttgccattggtgttccggcccaccacgctagcacttctcctcaacctaccccgttctcg
tcttctttcggtcagcacttcggtgggctgggacggagtccggtccatgctcccgaatcg
gcccctaattccaatgtttcgcaggccagaccggcgattcaaggagtacagggaatgggg
atgttgggatcacttggttcgagttcctcacaaattcggccaggtgggattccggcacac
caccaacagagacctgtccagtcatctcttagaccgtcatcttccccaactaaccagccc
tctatctcgcaaaatatgcaagggcatggccttttgagaatctcatcagtgggatctcct
ggttctccatcaccaaatacctcgcaaagtatgcaatccattaatcagccatggttgtca
tcaggatcgcaagggaagcctcctttaccatccccttcaaataggcttcaggtgaattca
caaatgcaacaacgtgcacatcttcctcaacaaccacagcctcatccggtgccagccgct
tcacagcagcaacatatgtcctctttgcagccgcaacaaccttcaccatcaaatcagctg
caagagcattatggacagcaatttgcaccttcaagggtccaacaaagtgttccccagcaa
cagcaaataactagggttcacgtctcaggaaatcagaagccttcctctcttgcaatgcta
caaccgaacacagtccagtctgggccccagaataggacagctatcgttgaaacagatgaa
tcttgtaatagaattcttaccaaaagaagtgtccaggagctagttagccaggttgatcca
ttagagaagttggatcctgaagttgaagacattcttgtggatattgcggaggattttgtt
gactctattacgacgtttggttgctcattggcaaagcatcggaaatcaaatacattggag
gcaaaagacatacttttacatcttgaaagaaattggaatatgacacttcctggttttggt
ggtgatgagattaagagctacagaaaactggttacaaatgatattcacaaggagcgcctt
gcagcaataaagaagtcaatagtagcaactgagacagcaaccaagatttctgctggacaa
gctgctggaagtgtaaagggtaatctggccaagacacctgccaatgcgttggcccctcaa
acctaa
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