Carya illinoinensis (pecan): 122279322
Help
Entry
122279322 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122279322
03041 Spliceosome [BR:
cill03041
]
122279322
03036 Chromosome and associated proteins [BR:
cill03036
]
122279322
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122279322
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122279322
mRNA cycle factors
Common to processing body (P body) and stress granule
122279322
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122279322
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122279322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122279322
NCBI-ProteinID:
XP_042945816
LinkDB
All DBs
Position
10:2445742..2451031
Genome browser
AA seq
616 aa
AA seq
DB search
MTTSWADSVADSASENAATAASDSNGLKRPTRSSYVPPHLRNRQSPSTDPPDSLHSVPSS
ANGRVGFGGPTTGLCWAGGSRPDLGRAAHNGSGGGRRGSGWSSRNGGWDRRREHEVNPFV
DDDNAERAISEQENTGINFEAYDDIPVETSGDNVPPPVNTFAEIDLGDSLNQNIRRCKYV
KPTPVQRYSIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRAARTAYPLA
LILSPTRELSCQIHDEVKKFSYQTGVKVVVTYGGAPINQQWRELERGVDILVATPGRLVD
LLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEI
QRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLIHAQKESGMQGKQSL
TLVFVETKKRADSLEHWLYVNGFPATTIHGDRTQQEREKALRSFKSGKTPILVATDVAAR
GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNEVNSSMARPLADLMQEA
NQEVPAWLLRYASRTSHGGGRNRRSWGGRFGGRDFRRENSFNRAMDYHGGAKGGGGYGFS
GGYGGRYGQGVTSAWD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttcgtgggcagattctgtagctgactctgcatctgagaatgcagccactgct
gcttctgatagtaatggcttaaaacgccccacccgatcatcctatgttccaccgcatctc
cgtaataggcaatctccttcaacagatccccctgattcattacactctgttccttcatcg
gccaatggtcgggtaggctttggtggaccaacaactggattgtgctgggctggaggttct
aggcctgacttggggcgtgcagctcataatggttctggtggtggtcgaagaggtagtggt
tggagtagtaggaatggggggtgggaccgaaggagggagcacgaggtgaacccttttgtt
gatgatgacaatgcagagcgagcgattagtgaacaagaaaatacgggtattaactttgaa
gcttatgatgatattccggtggagacaagtggggacaatgtgccaccccccgtgaatact
tttgcagaaattgacttgggggattcattaaatcaaaatattcggaggtgcaagtatgtg
aaaccaacacccgttcagcgttattctataccaatttctcttgcaggacgggacttaatg
gcttgtgctcagactgggtcagggaagactgctgccttttgctttccaattatcagtgga
atcatgcgggagcagtatgttcagagaccccgtgcagcacggaccgcataccctcttgct
ctaattctttcccctactagggagttatcatgccagatacatgatgaggtgaaaaagttt
tcctatcaaactggtgtcaaggtggttgttacttatggaggagcaccaatcaaccaacag
tggcgggagcttgagagaggagttgatatccttgtggcaacccctggacgattggttgat
ttgcttgagagagcaagagtctcattgcagatgatcagatatttggctcttgatgaagca
gatcggatgctggatatgggttttgagcctcaaatccgaaagatagtggaacaaatggac
atgcctccaccaggtgtgagacagacaatgctgtttagtgccaccttccctaaagagata
cagagattggcatctgattttctttcaaattacatatttttggctgttggaagggttggt
tcaagtactgatttgattgttcaaagagttgaatttgttcatgagtctgacaagagaagc
catctcatggatcttattcatgctcagaaagaaagtggaatgcagggaaagcaatcttta
actttagtttttgtggagacaaagaagcgagctgactcattggagcattggctgtatgtt
aatggttttcctgcaactaccattcatggtgacagaacacaacaggaaagagagaaggca
ttgagatcgttcaagagtggaaagacaccaattttagtggcaacagatgtagcggcacgt
ggtctggatattccccatgtagcgcatgtggtcaactttgatctccccaatgacattgat
gattacgttcaccggataggacggacaggccgggccggcaaaacaggattagcaacggcc
ttctttaatgaggttaattcatcaatggccaggccactggctgatctaatgcaagaagca
aatcaagaagtacctgcttggcttttacgatatgcgtcaaggacttctcatggtggtggc
agaaatcggcggtcttggggaggccgatttggcggccgtgattttaggagggagaattca
tttaatcgagctatggactaccatggtggagcaaaaggtggcggtggatatgggttttct
ggtggttatggtggccgttatggtcaaggtgtgaccagtgcttgggattag
DBGET
integrated database retrieval system
