KEGG   Carya illinoinensis (pecan): 122279587
Entry
122279587         CDS       T08745                                 
Name
(RefSeq) transcription factor bHLH140
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    122279587
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cill03400]
    122279587
Enzymes [BR:cill01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     122279587
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     122279587
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     122279587
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     122279587
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     122279587
SSDB
Motif
Pfam: DcpS_C AAA_33 zf-C2HE HIT Macro AAA_18 nSTAND3 G-alpha AAA_16 CPT Zeta_toxin AAA_25 AAA_22 ERM_C AAA AAA_17 Viral_helicase1 AAA_29 NB-ARC NACHT ATP_bind_1 AAA_5 AAA_30
Other DBs
NCBI-GeneID: 122279587
NCBI-ProteinID: XP_042946225
LinkDB
Position
10:complement(37822934..37832370)
AA seq 757 aa
MEMDIENAAKAKGEEIKEKSVVVILVGAPGSGKSTFCEQVMRSSTRPWARICQDTIGNGK
SGTKAQCLKSAASALKGGKSVFIDRCNLDREQRLEFVKLGGPNVDVHAVVLDLPAKLCIS
RSVKRTEHEGKLQGGKAAAVVNRMLQKKELPKLSEGFTRITLCQNESDVQACLNTYSALG
PMDTVPNGYFGQKNPDAKIQLGIMKFLKKAEVPAAETISDASRIQSSFSPQVLQEKNPGY
KRAENVSSFPVNTAKDLKECEDLAVCSAGSHILNDAPTLAFPSISTSDFQFDLEKASDII
IEKVEEFVNKLGNVRLVLVDLSHRSKILSLVKAKATEKNIDSSKFFTFVGDITRLCSERG
LHYNVIANAANWRLKPGGGGVNASIFNAAGPALEVATKEQAKSLHPGKSVAVPLPSTSPL
FTREGITHVIHVLGPNMNPQRPNCLNNDYIVGCKVLRDAYTSLFEDFASIVKTQAKLAKG
KNVNLVTNPLGLQEHNEGVNTKHSPNNDQKSKREDVDDYDRSKKCKASLYEVEANIHDFR
TEKEHTNNDKIDASMTKAWGSWAQALYHIAMHPEKHRDVVLEILDDVVILHDLYPKARRH
LLVLTRYEGLDCLTAVRKEHLNLLRTMHDVGMRWVEKFLQEDASLIFRLGYHSGPSMRQL
HLHVISQDFDSKHLKNKKHWNSFNTAFFYDSVDVIEDVSNHGKATLRDDESLLSTELRCH
RCRSAHPNIPRLKSHISNCRAPFPHSLLQSGRLVPPP
NT seq 2274 nt   +upstreamnt  +downstreamnt
atggaaatggacattgaaaacgctgctaaagccaaaggcgaagaaataaaggagaagtct
gttgtggtgatattggtgggtgccccaggtagcggcaagtccaccttttgtgagcaagtc
atgcgctcctccacgcgaccctgggctcgcatttgccaggataccattgggaatggtaaa
tccggaacaaaagcccagtgcctaaaaagtgcagctagtgcacttaagggtggaaaaagt
gtatttattgaccgatgcaatctagacagagaacagcggttggaatttgtgaagctcggt
ggtcccaatgtagatgtgcatgctgttgtacttgatcttcctgctaagctatgtatatcc
cgatctgttaaacgaaccgagcatgaaggaaaattacaaggtggaaaagctgctgcggtg
gtgaacagaatgctacaaaagaaagaattgcctaaactaagtgaggggttcactcggatc
acactttgccagaatgagagtgatgttcaagcttgtcttaacacatacagtgcacttggt
cctatggacaccgttccaaatggatattttggtcagaagaacccggatgccaaaattcaa
cttggtataatgaagttcttaaagaaagcagaggttcctgccgctgagacaatttctgat
gcaagcaggattcagagttctttttctcctcaagttcttcaggaaaagaaccctggatat
aaaagagcggaaaatgtttcttcatttccagtgaataccgctaaggacttaaaggaatgt
gaagacctggcagtttgctctgctggcagtcatattttgaatgatgctcccactctggca
tttccatctatttcaacatcagatttccaatttgaccttgagaaggcctctgatatcatc
attgagaaagttgaggaattcgtgaataagcttgggaatgttaggcttgtgttggtggac
ttgtctcatagatcaaagattttgtctttggtcaaggcaaaagctactgaaaaaaacatc
gactccagtaagttcttcacatttgtaggagacattacacgactctgttcagaaagaggt
ttgcactacaatgtaatagctaatgccgcaaactggcggctgaagcctggaggtggaggt
gtgaatgcttcaattttcaatgctgctggcccagcccttgaggttgctaccaaagaacaa
gctaaatctcttcacccggggaagtctgtggctgttcctcttccttcaacttctcccttg
tttactagggaagggattacccatgtcatacatgttcttggtccaaatatgaacccacaa
agaccaaattgtctgaacaatgactatattgtaggctgcaaagttctcagagatgcctac
acttcattatttgaagattttgcatccatagttaagacccaagcaaagttggctaaggga
aaaaatgtgaaccttgtgacaaaccctctagggctacaagaacacaatgagggtgtaaat
acaaagcattctcccaataacgatcaaaagagtaagagagaggatgtcgatgactatgat
agaagcaaaaagtgcaaagcatctctgtatgaagttgaagccaatatccatgattttaga
actgagaaggaacacacaaacaatgacaagattgatgcaagcatgaccaaggcatgggga
tcatgggctcaagcgctctaccatattgccatgcatcctgagaaacacagggatgtcgtg
ctggagattttggatgatgttgtaatattgcatgatctttatcccaaggcgagaaggcat
cttttggtgttgactcgatatgaaggtcttgattgcctcacagctgtgcgtaaagaacac
ctgaatttgttaaggacaatgcatgatgtgggtatgcgttgggttgagaagttcctgcaa
gaagatgcatcgttgatttttcgccttggatatcactcgggcccatcaatgcgacaactg
cacctgcatgtcattagccaagattttgattcaaaacatttgaagaataagaagcactgg
aattcatttaatactgctttcttttacgattcagtggatgtaattgaggacgtcagcaat
catggtaaagcaacattaagagatgatgaaagcctgttatctacagaattacgttgtcat
cgatgcagaagtgcgcaccccaacatacctcggttaaaatcacatattagcaattgccgg
gccccctttccgcactctttacttcaaagtggccgtctggtgccaccaccataa

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