Carya illinoinensis (pecan): 122279612
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Entry
122279612 CDS
T08745
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122279612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122279612
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122279612
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
122279612
NCBI-ProteinID:
XP_042946274
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All DBs
Position
10:complement(22462915..22469399)
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AA seq
579 aa
AA seq
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MDPERKKVLERVAVSTFPDEVLERVLVQLKSHKDRSSVSLVCHSWYDAERFSRTHVFIAN
CYSVTPEIVSRRFPNIRSVSLKGKPRFSDFNLVPPKWGADIRSWLVMFAAKYPFLEELRL
KRMTVTDESLEFLALSCPNFKGLSLLSCDGFSTDGLAAIATHCKNLTELDIQENDLNDKS
GSWLSCFPENFSSLEVLNFANLSNDVNFEALERLVSRCKSLKVLKVNRNITLEQLPRLLI
HAPLLTELGTGSFLQEHPACQYSELENAFNKCMNLNTLSGLSEVTALSLPALYPTCANLT
FLNLSCAALQSGELAKLLVHCPCLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPTDPFD
EDTFHGVTESGFIAVSYGCRRLSYVLYFCRQMTNAAVETIVQNCPDFTHFRLCIMNPWQP
DYQTNEPMDKAFCAVVKTCTRLQRLAVSGLLTDLTFEYIGKYAKNLETLSVAFAGSSDWG
MQCVLGGCPKLRKLEIRDCPFGNAALLSGLDKYESMRSLWMSGCKVTMNGCRLLAKEMPR
LNVEVIKVDGSNESQADKVYVYRSVAGPRRDAPPFVLTL
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgagaggaagaaggttctggaacgagtggcggtctcgacgttcccggacgag
gttctggaacgagttctggttcagttgaagtcccacaaagaccggagctccgtctctttg
gtctgccacagctggtacgacgccgagcggttttcacggacccacgtgttcattgcgaat
tgctactcggtgacgccagagatcgtgtcccggcgtttcccgaacatccggagcgtcagt
ttaaaggggaagccccggttctcggacttcaatttggttcctccgaagtggggcgccgat
attcggtcttggctggtgatgtttgcggctaagtacccgtttctggaggagctgaggctc
aagaggatgaccgttaccgatgagagcttggagtttctggctctttcttgtcccaatttc
aagggtctttcgcttttgagctgtgatggcttcagtactgatgggctcgcagcgattgca
actcactgcaagaatttaaccgaactggacatacaggagaatgacctcaacgataaaagt
ggcagttggttgagttgcttccctgaaaacttctcctcattggaagtactaaactttgcc
aatttaagtaatgacgttaattttgaagcccttgagagactggttagtaggtgcaaatcg
ttgaaggttttgaaggtcaatagaaatataaccttggaacaattgccaaggctgcttatt
catgcacctctattaacagagcttggtactggctcatttttgcaagagcatccagcctgt
caatactctgagcttgaaaatgccttcaacaaatgcatgaatctaaacaccctctctggt
ttgtcagaagttactgccttgtctctcccagctctataccctacctgtgcaaatttgact
ttcttgaatttgagctgcgctgctttgcaaagtggtgaacttgctaaacttcttgttcat
tgcccatgtcttcgtcgcctctgggtcctggacacagtcgaagacaagggtttggaggct
gttggatccaactgtcctctgcttgaggaactccgtgtcttccctactgatccatttgac
gaggatacgttccatggagtgactgaatctgggttcattgctgtctcttatggctgcagg
agactaagctatgttctctacttttgccgccagatgactaatgctgctgtagaaaccatt
gtgcagaactgccctgatttcactcacttcaggctttgcataatgaatccatggcagcca
gattaccagacaaatgagcctatggataaggctttctgtgcggtggtgaaaacttgcact
aggcttcagaggcttgcagtttcaggcttattgactgacctgacttttgagtacattggg
aaatatgccaagaacttggaaaccctgtcggttgcttttgccggcagcagtgattggggt
atgcagtgtgtattgggaggttgtccaaaactgaggaaacttgaaataagggactgccca
tttgggaatgcagcactgctatcgggcttggataaatatgaatccatgagatccctatgg
atgtcaggctgcaaagtaacaatgaatggatgtcgattgttggcaaaagagatgcccagg
ttgaatgtagaggtgataaaggttgatgggagtaatgagagtcaagctgataaagtttat
gtttatcgttctgttgctggaccaagaagggatgccccaccttttgttctcaccctctga
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