Carya illinoinensis (pecan): 122279663
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Entry
122279663 CDS
T08745
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122279663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122279663
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122279663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122279663
NCBI-ProteinID:
XP_042946354
LinkDB
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Position
10:complement(9797703..9802620)
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AA seq
483 aa
AA seq
DB search
MDSVMRMEMEPGKLFIGGISWDTNEDRLKEYFQSFGAVVEAVIMKDRATGRARGFGFVVF
ADPAVAERVVMEKHVIDGRTVEAKKAVPRDDQNILSRNNGSMHGSPGPARTKKIFVGGLA
STVTENDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKTFHELNGK
LVEVKRAVPKELSPGSSRGQMGGYNYGLSRVSSFLNYTQGYNQSSVGGYGHRVDNRFSPV
TVGRSGFHPFSPVYGTGLNNEPRLSPSYGGNANLSSHLGLGRGLNPSYAGSSNRNVNPIG
YGVGNGGNSSILNSASRNLLGNVSLNYAANSANPSPLMGLGSGNSGIGSFGNFGTLWSSS
PNSGQVGGAGTIHSSGNLSYGSGEVSFGSGGVGYGRNSGTGVALASSYAASNGNYRGSFE
EIYEGGSFYGDPTWRLSPLELEGSGSFGLGLGHGASDILSRSSDDYVGLYGVTNRQSNRG
IAV
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtgatgagaatggaaatggagcctggcaagcttttcatcggcggaatatct
tgggacacaaatgaagaccgacttaaagagtatttccagtcttttggagcagtagtggaa
gctgtgataatgaaggatcgggccactggtcgtgcccgtggtttcggttttgttgttttt
gcagaccctgctgttgcagaaagagttgttatggagaagcatgtgatagatggtagaact
gttgaagcaaaaaaagcagttcctagagatgatcagaatattctgagcagaaacaatggc
agcatgcatgggtctcctggtcctgcccgcacaaagaagatatttgtaggaggtttagca
tccacagtcacagaaaacgattttaagaagtacttcgatcaatttgggataataacagat
gtggtggtgatgtatgaccataatacccaaaggccaagaggatttgggttcattacatat
gattcagaggaagcagtggagaaagtattgtacaaaacctttcacgaactcaatggcaaa
ctggttgaagtgaaacgagctgtccctaaagaactatctccagggtcaagtcggggccaa
atgggtggatataactatggtctgagtagagttagcagcttccttaattacactcaggga
tacaatcaaagttcagttgggggctatggacatagagtggataatagatttagtccagtt
acagttggtcgcagtggatttcatcccttcagtcctgtgtatgggactggattgaataat
gagcccaggttgagtccaagctatggaggaaatgcaaaccttagttctcaccttggcctt
ggacgtggattgaacccttcatatgctgggagttcaaataggaatgttaaccccattgga
tatggtgtgggcaatggtggaaatagttcgatcttaaattcagcaagccgtaacctgttg
gggaatgtgagtcttaattatgctgctaactctgcaaaccctagtcctttaatgggcttg
ggaagtggaaattctggaattggttcttttggcaattttggaacactttggagctcctct
cctaactcaggccaagttggaggtgctggaactatccacagtagtggcaatcttagttat
ggcagtggagaagtcagttttggttcaggaggggtagggtatggaagaaatagtggaact
ggtgttgcactggcatcatcatatgctgcatcaaatggcaattacagagggtcttttgaa
gaaatttatgaaggcggttcattttatggggacccaacttggcgattgtcacctctagag
ctagaggggtctggctcatttggtcttggccttggacatggagcttcagatattttgagt
agaagctctgatgattatgttggcctttatggtgttaccaacagacaatcaaacagagga
attgctgtgtag
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