Carya illinoinensis (pecan): 122279772
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Entry
122279772 CDS
T08745
Name
(RefSeq) cyclin-dependent kinase D-3-like isoform X1
KO
K02202
cyclin-dependent kinase 7 [EC:
2.7.11.22
2.7.11.23
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
cill03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122279772
09124 Replication and repair
03420 Nucleotide excision repair
122279772
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cill01001
]
122279772
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122279772
03019 Messenger RNA biogenesis [BR:
cill03019
]
122279772
03400 DNA repair and recombination proteins [BR:
cill03400
]
122279772
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.22 cyclin-dependent kinase
122279772
2.7.11.23 [RNA-polymerase]-subunit kinase
122279772
Protein kinases [BR:
cill01001
]
Serine/threonine kinases: CMGC group
CDK family
122279772
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122279772
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Capping factors
122279772
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122279772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
ABC1
Haspin_kinase
UBA_HYPK
Seadorna_VP7
RTC
Motif
Other DBs
NCBI-GeneID:
122279772
NCBI-ProteinID:
XP_042946531
LinkDB
All DBs
Position
10:7251080..7257806
Genome browser
AA seq
415 aa
AA seq
DB search
MTQLDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQKVAIKKIRLGRQKEGVNFTALR
EIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMT
LKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRKFTHQVFARWYRAP
ELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKPSQWSDML
YLPDYVEYQHVPAPPLRSLFPMASEDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLA
TDPDKLPRPAPKRESRVSDFNSHDGPTVLSPPRKSRRVMPEREGFEGNAYQVDKNDDHIG
EMRQAAGDNTSRNEPVPMSIDFSIFGAKPPNRPTINSVDRTHLKRKLDLEFQHPE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgacacagctcgatctgtccaagaaagtagccgatagatatctgaagcgagaagtcctt
ggcgaaggtacctatggagttgtctacaaagccattgataccaagacaggacagaaagtc
gcaattaagaaaatccggcttgggaggcaaaaggaaggggtgaattttacggcacttaga
gaaatcaagctgcttaaagagcttaaagatccgaatataattgagttaattgatgcgttc
ccccataagggtaacttgcaccttgtgttcgagttcatggagacggaccttgaagctgtt
attcgtgaccgaaatatatttctttcaccggctgacataaaatcataccttcagatgaca
cttaaaggacttgcatattgccacaagaaatgggttttacatagggatatgaagccaaac
aacttgttaatcggatcaaatggacagctcaaacttgcagattttggtttagcacgaata
tttggcagcccggatcgcaagtttactcaccaggtctttgctcgatggtatagagcacct
gaactgttgtttggtacaaagcaatatggttcgggggtggatgtttgggctgcagcttgt
atttttgctgaacttctcctgcgtcgtccttttctgcagggttcaagtgacatcgatcaa
ttaggaaagatctttgctgcatttgggactccaaaaccttctcagtggtctgatatgcta
tacctccccgattatgtggagtatcaacatgttcctgcaccccctctacggtcactgttc
ccgatggctagtgaagatgctttagatctgttgtcgaagatgtttacttatgatcccaaa
gctagaatatcagtgcagcaggcacttgagcaccgatacttttcatctgcaccactggct
acagatccagataaactccctagacctgcacctaagcgtgaatctagggtttcagacttt
aactcacatgatggtccaactgtcttatcgcctccaagaaagtccaggagagtgatgcca
gaacgtgagggttttgaaggaaatgcctaccaagttgataagaatgatgaccatattggt
gagatgagacaggcagctggtgacaatacaagcaggaatgaaccagtcccaatgtcgata
gatttttctatttttggagcaaaacctccaaataggccgacaattaacagtgttgacaga
acacatttaaaaaggaaattagatcttgaattccaacatcccgaataa
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