Carya illinoinensis (pecan): 122280088
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Entry
122280088 CDS
T08745
Name
(RefSeq) vacuolar sorting protein 3
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122280088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122280088
Membrane trafficking [BR:
cill04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122280088
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
Clathrin
Vps39_1
TPR_Vps41
CNH
TPR_PEP5_VPS11
Motif
Other DBs
NCBI-GeneID:
122280088
NCBI-ProteinID:
XP_042946977
LinkDB
All DBs
Position
10:complement(7402406..7426244)
Genome browser
AA seq
1093 aa
AA seq
DB search
MRKQNEGGIILFLQENSDFGSVQNNLNKGSIANPIRPKCWSDLVPSTGSLDRASSCLSFF
VATHQRPSSLLVDMPEPRTRTVLEHLAQFDLSSHSGSPTRSLAISTVSDSQTFIYVGTLS
GTLILLSTNPENPSTSTTPEKPLKVATFLQQNVSLLRSVLVGDDSPVDRILFLGEIGKVL
LLSGGALFLVDSLLLQPVRRLSFFKGVSVITRRFRSSNQAESTNLTENSANTNASSSEYT
STSQRILQRLGGGIRANGLRDKESELNHRTEGDFVFAVVIGKRLILVELVLDGIVSKSDR
DLDGVNGSFVVLKEIQCLDGVMTMVWLDNSIIVGTVNGYSLFSCVTGQSGIIFTLPDVSS
LPQLKLLWRDWKVLLLVDNVGVLVNTHGQPVGGSLVFRRGGPDSIGEISSYVGVVKDGNM
ELYHKKSGGCIQKVTFGGEGVGPCIVANEEVGGGKLLAVATPNKVLCFRKLSSEDQLKDL
LRKKSFKEAITLAEELEYDGEISKDMLSFVHAQVGFLLLFDLRFEEAVNHFLHSETMQPS
EVFPFIMRDPNRWSLLVPRNRYWGLHPPPKPLEDVVDDGLMAIQRATFLIKAGVETLIDD
GFLSNPPSRADLLESAIKNITRYLENCRVKELALPVREGVDTLLMYLYRALNRVNDMEKL
ASSANSCIVEELETLLDETGHLRTLAFLYASKGMSSKALAIWRILARNYSSGLWKDPNME
NGSQDSNNNIISGKEIAATEASKILEESSDQELILQHLGWVADINQALAVQVLTSEKRAN
QLSPDEVVAAIDPRKVEILQRYIQWLIEDQDCDDTRFHTLYSLSLAKSAIEAFEAQNTHQ
NADVGKADDTEISANRMNSIFESPVRERLQRFLQSSDLYDSEEVLDLIEGSELWLEKAIL
YRKLGQEASVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQDGKEPMFKAAVR
LLHNHGESLDPLQVLEKLSPDMPLQLASETILRMFRARLHHHRQGQIVHNLSLAVDVDAK
LARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTVVCYKCFRRQGESTSVTGRNFK
QDVLIKLGWLVTQ
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagcaaaatgagggcggcattattctttttcttcaggaaaattcggactttgga
tctgtacagaacaacttaaacaaggggtcgattgccaatccaatccgacccaaatgttgg
tcggatcttgtcccttccactggtagtctcgacagagcatcttcttgtctctctttcttc
gtcgcgactcaccagcgccctagctctctgctcgtagacatgcccgagcccaggactcga
accgtcctcgaacacttggctcagtttgacctctccagccactctgggagcccgacccga
tccctcgccatctctaccgtctcagactcccagacctttatttacgtcggaactctatcc
ggaaccctaattctgctctctacaaaccctgaaaatccaagcaccagtaccacccccgaa
aaacctctcaaagtcgctacgtttttgcagcaaaacgtttcgcttctgcgaagtgttttg
gtcggcgatgattctcccgttgatcggatactgtttctaggtgagattgggaaggttcta
ctactttcaggtggggctttgttcttggttgattcccttttattacaacccgtgaggagg
ttgagtttcttcaagggagtgtctgttataaccaggcgatttcggagcagtaatcaagcg
gagagtacgaatttgacggagaatagtgctaacacaaacgcttcttcttcggaatacacg
agcacgagtcaacggattttgcagagattgggtggtgggattagagctaatggtctgaga
gacaaagaatccgaactgaaccaccggactgaaggtgattttgtttttgcagttgtgatt
ggtaaaagattgatactggtggagctcgtcttagatggtatagtaagtaaaagtgacaga
gatctcgatggcgtaaatggatccttcgtagttttaaaagaaattcagtgtcttgatggg
gttatgaccatggtgtggcttgataattctataattgtcggaacggttaatggatatagt
ttgttttcgtgtgttacggggcaaagtggtataatatttactttgccggatgtgtctagc
ctgccgcagcttaaattgttgtggagagactggaaggtgcttttgttggttgacaatgtg
ggtgttcttgtcaacacgcacggccagccagttggtgggagtttggtgttcaggcgtggt
ggaccggactctattggggagatatcttcttatgtgggtgttgtgaaggatgggaacatg
gagttgtatcataagaaatcgggaggttgtattcaaaaagttacttttggtggtgaaggg
gttggaccttgcattgttgcaaatgaggaagttggaggggggaaacttttggctgttgca
acacccaataaggttctttgcttccggaaattatcttctgaagaccaactcaaagatttg
ttgagaaagaaaagctttaaagaagcaatcaccttggcggaggagcttgagtatgatggt
gaaatatcaaaggatatgctatcctttgttcatgctcaagtgggattcctattgcttttt
gacctgcgatttgaggaagcagtaaatcactttttgcattcagagacgatgcagccttct
gaagtatttccatttataatgcgagatccaaatcgctggtcactgctggttcctagaaac
cgttattggggtttgcatcccccccctaaacctcttgaagatgttgtagatgatgggttg
atggccatccaaagagctaccttcctgataaaagcaggtgtagaaactttaatagatgat
ggttttctttcaaatccaccaagcagggctgatttgttggagtcggcaatcaagaacatc
accaggtatttggaaaactgtcgggtgaaagagttagcattgccagtaagagagggagtt
gacacactattaatgtacctttatagagctctaaatcgtgttaatgacatggagaagctg
gcatcttcggcaaacagctgtatcgtggaggagttggaaactttattagatgaaactggg
cacttgcggacgcttgccttcctctatgcaagtaaagggatgagctccaaggctcttgct
atttggcgtattttggcaaggaattattcaagtggcctctggaaagatcccaatatggaa
aatggctcacaggattccaataataatattatatcaggtaaggagattgctgcaacagag
gcatcaaagattcttgaggaatcatccgatcaagagttaattctacaacatcttggatgg
gttgccgatatcaaccaggcacttgctgttcaagttttaacctcagagaaaagagccaat
caactttcaccagatgaagttgttgctgctattgatcctagaaaggtagaaattcttcag
aggtacatccagtggttgattgaagatcaggactgtgatgatactcgtttccacacattg
tattctctatcacttgccaaatcagccattgaagcttttgaagcacaaaatacacatcaa
aatgctgatgttggaaaggcagatgatacagaaatttctgctaacagaatgaactcaatc
tttgaaagtcctgtccgagaaagactgcagagatttttacaatcttctgacttgtatgat
tcagaagaagttctcgacttgattgaaggatcagagttatggttagaaaaggcgattctc
tacagaaaacttgggcaagaggcatcagttctacagatcttggccttgaaactggaagac
agtgaagctgctgagcagtattgtgctgagattggcagaccagatgcctatatgcagtta
cttgatatgtatttggatccgcaagatggcaaggagccaatgtttaaggctgctgttcgc
cttctacacaatcatggagaatcattggatcctttgcaagttttggagaaattgtccccg
gatatgcccctacaactagcatcagagacaatattaagaatgttcagagctcgccttcat
catcatcgacaaggacagattgtgcataatctatccctagccgtggacgttgatgcaaag
ttagcgagattagaggaaagatcaagacatgttcagatcaacgatgaaagcctttgtgat
tcttgtcatgcccgcctaggaactaaactgtttgcaatgtacccagatgataccgttgtc
tgctacaagtgttttcgtcgccagggtgagtccacttctgtcacaggtcgcaacttcaag
caagatgttcttatcaaactgggttggcttgtgacccaatga
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