Carya illinoinensis (pecan): 122280615
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Entry
122280615 CDS
T08745
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
cill03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122280615
09124 Replication and repair
03420 Nucleotide excision repair
122280615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122280615
03400 DNA repair and recombination proteins [BR:
cill03400
]
122280615
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122280615
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122280615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
122280615
NCBI-ProteinID:
XP_042947518
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All DBs
Position
11:45031870..45044560
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AA seq
597 aa
AA seq
DB search
MATRHLIKRAKYKTTAKGSGIPGVLEMTKNKIAFKPNDPTSVTMINVDFRSIKGHKNTKE
GSSNPPLINLVLDQGGSYIFEFENFSDLQVCREFVVNSLAKSGEGLIATSDKPVVASHDE
QLSTAEMELRMKLLQENSELQKLHKQFVLGNILTESEFWATRKKLLDGDSSQKSKQRIGF
KSSMILDTLPLHDARTNKLTFNLTQETKYQIFALKPAVQQAFLNLVPNKMTEKDFWTKYC
RAELLHYKRNAMAAAAEAAEDEDLVIFLKDDDILASEARRKIRRVDPTLDIEADQGDDYM
HLPDHGIFRDGSKEITESQHELYRRTFLQDLNRQGEVVLEGRTIDVELDNPTNVAEALAQ
SRQESDATAKEERLYRTSRMTEMEDLQAPHDHPFTPLCIKDPRDYFDSQQANALKTYDDT
RAGTEQLSCSLNSEEAYGFLRRSISEIEAMGLSAHMVRPEVALTVINGLTQNISSTKYQL
GKNVHESVLDGLPNTTKEELLHYWTSIQELLRHFWSSYPITTSYLYAKTEGSHVKNLSAA
GGNKGIGSLRAPPAGFSPCSSYASGSRCCFSTLRVGSAKENGKGWRETKWICLGGVY
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacggcatctgattaagcgggccaaatataagaccacggcaaagggctccggg
attcctggtgtattggaaatgaccaagaacaagattgcgttcaagcctaatgatcccact
tcagtcacaatgatcaatgtagattttagatcaataaaaggtcataaaaacaccaaagag
ggatcaagcaatccaccattgattaatctcgtccttgatcagggtggaagttacattttt
gagtttgaaaatttctcggatcttcaagtttgccgagaatttgttgtaaattctcttgca
aagtccggggagggtttgatagccacttctgataaacctgtggttgcttcccacgatgaa
caactcagtacagcagagatggagcttcgaatgaagctattgcaagagaatagtgagttg
cagaaacttcataagcaatttgtgcttggtaatatcttgacagaatctgagttctgggct
acaagaaagaagttgctggatggagacagcagccaaaagtcaaaacaacggattggtttt
aaaagttcaatgattctagacacactgccattgcacgatgctcggacaaacaagcttaca
ttcaacttgacacaagagaccaaatatcagatttttgctctgaaaccagctgttcaacag
gcattccttaatctcgtacctaataagatgacagaaaaggacttctggacaaaatattgt
agagctgaattacttcattataaaagaaatgccatggcagccgcagcagaggctgctgaa
gatgaggatctagtcattttcctgaaggatgatgacatattggcaagtgaagctcggcgg
aagattcggcgagttgatccaactctagacattgaggctgaccaaggggatgattacatg
catctgccagatcatgggatttttcgtgatggtagcaaggaaataactgaatcacagcac
gagctatataggagaactttcttacaagacctgaaccgacagggtgaagttgttcttgaa
ggaagaactatagatgtagagttggacaatccaacaaatgtagcagaagcacttgcgcag
tcaagacaggaatctgatgcgactgcaaaggaggagagactttataggacctctcggatg
actgagatggaggaccttcaggcacctcatgatcatccttttactccactttgtatcaag
gatccacgtgattactttgattctcaacaagctaatgcacttaaaacttatgacgataca
cgagctggaacagaacaactgagttgtagtctgaattctgaggaagcatatggctttttg
aggcgttcaatatctgagatcgaggctatgggattgagtgctcatatggtcagacctgag
gttgcacttacggtcattaatggattgacccagaatatatcaagtaccaagtatcaactg
gggaagaatgttcacgagagtgtactggatgggctacctaacacaactaaagaggaactg
ctacattattggacatccattcaagaattattgaggcacttttggtcttcatatccaatc
actacatcgtatctttatgccaagactgaaggaagccatgtcaaaaatttatccgcagct
ggaggaaataaaggaatcggttccctcagagctccgccagcaggtttttctccttgttcg
tcctatgcatcaggctctagatgctgcttttcaacattacgagtcggatctgcaaaagag
aacggcaaggggtggagagaaaccaaatggatatgtctaggaggagtatactaa
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