Carya illinoinensis (pecan): 122280700
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Entry
122280700 CDS
T08745
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122280700
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122280700
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
122280700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_30
AAA_19
DEXQc_Suv3
T2SSE
Tc-R-P
Motif
Other DBs
NCBI-GeneID:
122280700
NCBI-ProteinID:
XP_042947614
LinkDB
All DBs
Position
11:complement(9897984..9947522)
Genome browser
AA seq
2090 aa
AA seq
DB search
MLVQLPRLTNTLRDPFDVDQAYLQRKLILQNYNRPRNSGSSLDESELARKIIHRWEEASF
EVRQAYKQFIAAVVELIDGEMPSEEFHEVAVAVYRLFGVPVEEDSVDRNIAEKKLELQKL
LDHVVADTNLERVASLSQNLFGLVSTDHRSLHDLETHVNGSSNDLEFGADLIFQAPTRFL
MDVSLEDGELPGVESFAPYSSFHEGWFEHNDSQHNPSASNGGNFNLSCLRDACDRIVREC
TSQLSRDELAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQNILSHRKELVDAIHHGF
LVLKSEKTASNAQSRMPSYGTQVTVQTESGKQIDKLRRKEEKRHRRGTEYGAENDLSAAD
FSSLLQASETKNLLDDLVGSGPGAQSLAVTALPQGTVRKHYKGYEEVIIPPTPTAQMKPG
ERLIEIKELDDFAQAAFRGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISIL
HEIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNMTVRELTGDMQLSKNE
LEETQMIVTTPEKWDVITRKSSDMSLSVLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV
ESTQTMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPVPLAQQYIGISEQNFAA
RNELLNEICYKKVVDSLRQGHQAMVFVHSRKDTAKTAQKLVELGRKYDDLEVFKNDTHPQ
FNLIKREVVKSRNKDLVELFEYGIGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWG
VNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAY
YLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGI
GWDEVVADPSLSLKQRSLVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSV
ETYNEMLRRHMNDSEVIDMVAHSSEFENIAVREEEQNELETLVRTSCPLEVKGGPSNKHG
KISILIQLYISRGSMDTFSLVSDAAYISASLARIMRALFEICLGRGWCEMSLFMLEYCKA
VDRQIWPHLHPLRQFDKDISSEILRKLEERGADLDRLQEMQEKDIGALIRYANGGKLVKQ
CLGYFPWIQLSATVSPITRTVLKVDLCIMPEFIWKDRFHGATERWWIVVEDSENDHIYHS
ELFTLTKRMARGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYTISFHNLALPEAR
TSHTELLDLKPLPVTSLGNSTYEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKT
ISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMNDWKKRLVAQLGKEMVEMTGDYTPDLM
ALLSADIIISTPEKWDGISRNWHSRSYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYI
SSQTERAVRFVGLSTALANAGDLADWLGVGETGLFNFKPSVRPVPLEVHIQGYPGKFYCP
RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNMLEEAL
QMVLSQITDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP
AHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKF
LYEPFPVESSLKEQLHEHINAEIISGTICHKEDAVHYLTWTYLFRRLTVNPAYYGLENTG
PEILSSYLSSLVQNTFEDLEDSGCIKMSDDSVEPTMLGSIASQYYLSYMTVSMFGSNIGP
DTSLEVFLHILSAASEYDELPVRHNEENYNEALSKRVRYMVDRNRLDDPHVKANLLFQAH
FSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLLSSITCMHLLQMVMQGLWFDK
DSSLWMLPSMSDDLASLLNKRGISKVQQLLDLPKATLQTTVGNFPASRLYQDLLHFPRVQ
VRLKLQRKGNDDVKASTLNIKLEKINSKRNASRAFTPRFPKVKDEAWWLVLGNTFTSELY
ALKRVSFSDRMVTHMELPSTSTGLQGMKLIVVSDCYLGFEQEHSIDNLTY
NT seq
6273 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcagcttcctcgcttgaccaacactctgagagaccccttcgacgtcgatcag
gcctatctccaacggaaattaatcctccaaaactacaataggcctcgcaattctgggagc
tcacttgatgagtcagagcttgcccggaagatcatacaccggtgggaagaagcctctttt
gaagttcgacaagcatacaagcagtttattgcggcagtagtggagttgattgatggcgaa
atgccctcagaagagtttcacgaggtggcagttgctgtatatcgtctttttggcgtgcca
gtggaggaggacagtgttgatagaaacattgccgagaagaagttagaattgcaaaagctt
cttgatcacgtggttgctgacactaatctggagagagttgcctctctatctcaaaatctt
tttgggttggtatcaaccgaccataggtctctacatgatttggagacgcatgtaaatggg
agttctaatgatttagaatttggtgctgaccttatttttcaagcaccaacaaggtttctg
atggatgtttctttggaggatggggaattaccgggtgtggaaagctttgctccttattct
tcgtttcatgaaggctggtttgaacataatgactctcaacataatcctagtgcttctaat
gggggaaactttaatttgagttgtttaagagatgcatgtgatcggatagttagggaatgt
acttcacagctttccagggatgaactagcgatggcaatttgtcgagttcttgactcagac
aaacctggtgaggagattgctggtgatttgttggatctcgttggtgatagtgcatttgag
actgttcaaaacattttgtcgcaccgaaaggaacttgttgatgctatccatcatggattt
ctggtactgaaatctgaaaaaacggcttcaaatgctcaatcacgtatgccaagttatggt
actcaggttacagttcaaacagagtcaggaaagcaaattgataaacttcggcgcaaggag
gaaaaaagacatagaagaggaacagaatatggagctgagaatgacttgtctgctgctgat
ttttcttctttacttcaagcaagtgaaacaaaaaatcttcttgatgatctggttggatct
ggcccaggggcccagtccctagcggttactgctctccctcaaggaactgtcaggaagcat
tataagggatatgaggaggtcattatccccccaacaccaaccgctcaaatgaaacctgga
gagagactgattgagataaaggagttagatgactttgctcaagctgcttttcgtggctac
aaatctctgaaccgcattcagagtcggatatttcaaacagtttatcacactaatgagaat
atactagtttgtgctccgacaggagctggcaaaacaaatattgctatgatttctattctc
catgagattggtcagcacttcaaggatggttacttgcataaagatgagtttaagatagtt
tatgttgctcccatgaaggcattagctgcagaggtaacatcaacatttagccatcgttta
tctcctttgaacatgactgtgagagaactgactggagacatgcaactttctaagaatgaa
cttgaagaaactcagatgatagtaacgacacctgagaaatgggatgtcatcacccgcaag
agcagtgacatgtcactttcagtgctggtgaagctcttaattattgatgaagtgcatctc
ttgaatgacgatagaggccctgtaatagaggcacttgttgctcggaccctccgtcaggtg
gagtcaacacaaacaatgatacgcatcgtggggctttcagccactctacctaattatttg
gaggtcgcgcaatttttgagagtgaatccagagatgggactcttcttctttgattctagc
tatcgtcctgttcctcttgctcaacagtatattggaattagtgagcagaactttgcagct
cgcaatgaattgttgaacgaaatatgctataaaaaggtggttgattcattaaggcaaggt
catcaggcaatggtgtttgttcattcacgaaaggacactgcaaaaacagcccagaaattg
gttgaacttggccgaaaatatgatgatctggaggtcttcaagaatgatacacatccacaa
tttaacttaataaagagggaagttgttaagtccagaaataaagatcttgttgagcttttt
gaatatggaattggtgttcatcatgctgggatgcttcgtgcagatagaggtctgactgag
cgtcttttctctgatggactcttgaaggtactggtttgcacagcaactttggcatggggt
gtaaatctgccggctcacactgttgtgattaagggtacacaattatatgatccgaaggct
ggtgggtggcgagacctaggcatgcttgatgttatgcagatcttcggaagggctggtaga
cctcagtttgacaaaagtggtgaaggtataataatcacgtcccacgagaaattagcctac
tatctgcgattgctgacgagtcaactccctattgaaagtcagtttattagctccttgaaa
gataatttgaacgcagaagtagcattgggtacagtaactaatgttaaggaagcctgcgcg
tggcttggatatacatatctttttataaggatgaggttgaatcctctggcatatggtatt
ggatgggatgaggttgtcgcagatccttcgttaagtttaaagcaaagatctcttgtaaca
gatgctgcacgtgcacttgacaaagcaaagatgatgcgctttgatgagaaaagtggcaat
ttttactgtactgagcttggtcgcattgcaagccacttttatattcaatactctagtgtt
gaaacttacaatgaaatgttgagacgccacatgaatgatagcgaggtaattgacatggtg
gcccactcttctgaatttgaaaacattgctgtacgagaagaggagcagaatgagttagag
acattggtgcggacatcatgcccgttagaagttaaaggtggtccttcaaataagcatggc
aaaatatccattctcattcagttgtacatatctcgaggctctatggataccttctcattg
gtttctgatgctgcatatataagcgcaagcttggctcgtattatgagagctttatttgaa
atttgtttgggaagaggctggtgtgagatgtctttgttcatgttggaatattgcaaggct
gtggatcggcaaatttggccccatctacatccccttagacaatttgacaaggatatttca
tcagaaatacttcggaagcttgaagaacgaggggctgatttagatcgcctacaggagatg
caggaaaaggacattggagcattgattcgttatgcaaatggaggaaagttggttaagcaa
tgtttaggatatttcccatggattcagttatcagcaactgtaagtccaatcaccagaact
gttttgaaggtggatctctgtataatgccagagtttatatggaaagatcgtttccatggt
gccactgagcgttggtggattgtggttgaggactcagagaacgatcatatctaccactca
gaacttttcactctgacaaagcggatggccagaggtgaacctcagaagctgtccttcact
gtgccaatatttgaaccacatccaccccaatattatatacgtgctgtttctgattcctgg
ttgcatgctgaggctttctataccatttctttccataatctagcgctgccagaggctcgt
acttcacacacagaacttctagatttaaaacctctccctgtgacttcactgggcaacagt
acttatgaagccttgtacaagttttcacattttaatcctatacaaacacagactttccat
gtcctttatcacactgacaacaatgtgctgttaggagctcccactggaagtgggaaaacc
atatctgctgagcttgccatgcttcacctctttaatactcagcctgacatgaaggttatt
tatattgcaccattgaaggctattgttcgggaaagaatgaatgattggaaaaagcgactt
gtcgctcagcttgggaaggaaatggttgaaatgactggagattatactccagatttgatg
gccctcttgtcagctgatatcataatatctactcctgagaagtgggatggtatcagtcgt
aattggcatagtcgaagctacgtcaaaaaggttgggcttatgattttggatgagattcac
ttattgggagctgatcgtggccctatccttgaggttatagtttcaaggatgagatacata
tcatcacaaacagagcgtgcagtacgatttgtaggcctgtctaccgctttagcaaatgca
ggcgatttagctgattggttgggtgttggggaaaccggacttttcaacttcaagccaagt
gtgaggcctgttcctcttgaagttcatatccagggatatcctggaaagttctactgcccc
aggatgaatagcatgaataaaccagcatatgctgctatatgcacccattcacctacaaaa
ccagttctgatatttgtttcatctcgtcgtcagacaagactaactgctttggacctcatt
cagtttgcagcttcagacgaacaatcaaggcagtttctgaatatgctagaagaagcactt
cagatggttctttcacagataactgatcagaacctgaggcacaccttacaatttggcatc
gggttacaccatgcaggtctgaatgacaaggatagatctcttgtagaggaactttttgca
aacaacaagattcaggtgttggtttgtaccagcacattggcgtggggtgtgaaccttccg
gctcatctggtcattatcaagggaacagaatattatgatggaaaagcaaagagatatgtt
gattttccaatcacggatatcttgcaaatgatgggtcgtgctggccgcccacaatttgat
caacatgggaaagcagtcatacttgtacatgaacccaaaaagagcttctataaaaagttt
ttgtacgaaccatttccagttgagagcagtctgaaagagcagttgcatgagcacatcaat
gcagagataatttctggcactatttgccataaggaggatgcagtccattaccttacctgg
acttacttattccgtagactgacggttaatccagcttactatggattggagaatacaggt
cctgaaattctaagctcatatttatctagcttagtgcaaaacacgtttgaggatctggaa
gacagtggatgcatcaagatgagtgatgacagcgtggagcctacaatgttgggttcaata
gcatctcagtattaccttagctacatgactgtatctatgtttggttcaaatataggtcca
gatacatcacttgaagtgttcctgcatatactctctgctgcctctgagtatgatgaactt
cctgtgcggcataacgaggaaaattacaatgaagcgttgtccaagagagtgcgatatatg
gtggataggaatcggctggatgatccacatgtcaaagcaaatctgctctttcaggcacat
ttttctcagttagaactacccatcagtgactatgtcacggacttaaagtcagtgttggat
caaagtatacggatcatccaggccatgatagatatatgtgcaaacagtggatggcttttg
agctcaattacttgcatgcatcttttgcaaatggtcatgcagggattatggtttgataag
gactccagcttatggatgttgccatccatgagtgacgatcttgcgagtctgttaaacaaa
agaggaatttccaaagtgcagcagctgttggatcttcccaaggcgactttgcagactaca
gttggaaactttcctgcttcaagattatatcaggatttactacactttccacgtgttcaa
gtgagattaaaacttcaaagaaagggcaatgatgatgtaaaggcttccactttgaacatc
aaattggagaagatcaattccaagcggaacgcatcaagagcgtttacccctcgatttcca
aaggtaaaagatgaagcatggtggttggttctgggtaacaccttcacgtccgaattatat
gctctgaagagagtctctttctctgatcgcatggtcacacacatggagttgccatcgact
tcgactggtcttcagggtatgaaattgattgtagtgtcagactgttatcttggttttgaa
caagaacactccatcgacaaccttacttactga
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integrated database retrieval system
