Carya illinoinensis (pecan): 122280929
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Entry
122280929 CDS
T08745
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122280929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122280929
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122280929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
122280929
NCBI-ProteinID:
XP_042947998
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Position
11:complement(27473141..27481579)
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AA seq
1267 aa
AA seq
DB search
MMDYSLPIAKRTRQGRALIYEEYHEKKKKEKRKDNNGVDSVTPSVPSRGNRKKLAEMVQG
ISWSERLGANCKMKTQSETVSMPGRSEEASVEEIRVNDCAEEGSESMNLVGRESQGLKNK
ECSKMEFEGMDNVDEIMVDDSEEDVVFLAEGVGLDCVNSNSSRLTLGLLRDEGVVCIDAD
DETDLSVKHVNESGVLNYNGVRDSDEMISSLKGKVESSCLIFNDRDSKGTAARTRSRFRL
LKRNENEDGGDDAASAFSKRNNDKDVGDNVLSDWLRRNVDEDDGDEFILETSLESSSSED
DNDDDDYEAEQLQSCGGSKKFSSNSSSQEDEEEEVAAESKNMNRGRKKRGRPKRVDAGVK
MRRYGLDFVVYSDRYIDVNNHEEGSVNVLHDYVAKRTRSHFISKWRKKKMKLGTFSHPLC
VDEEEIESSSGHDDSNEGGDDAYENEDDFSDDEAYHAGKKTVSTRSKYKSDKGNRGERVQ
STKRMPTKCKGIRWEKSCNVMKILIDSILDKEEVRLEELASSGDEACKDESNPSVAETHL
PLKFTFGIEESNSPKKSEDDKKMDELWAELELALRASEIGSIDSVKVENEDALPPEDDVD
SATLCHLGNHQIILDEQVGFRCAFCSYVKMEIKYILPSFSTHPCGKSDWRDSGGAMNHSI
FDELGSQDSLCDSYHDCGSREHAEGTVWDIIPGIKSSMYSHQRDGFEFIWKNIAGGIYLD
ELKNQTTFSGGNGCIISHAPGTGKTRLTVVFLQAYMSLNPGCRPLVIAPCSMLLTWEEEF
QKWKFNIPFHNLNKPELSGKESKFADYIVRQVGHLEKTDIRILKLYSWKTDRSILGMSYK
LFVKLTGERKGELKVSKQHAHLRKILLELPGIVVLDEGHIPRNSDSHILQALSNIKTEKR
VILSGTPFQNNFDELYNTLCLARPKFANIRHRWGSLTSSITKATDDRLKCEKLKKVRDMI
EPFVHVHKGSILQEKLPGLRDSVVILKPAQLQKSLFDELSHYAKGNHFKFEHYESLISVH
PSILLKCGGKEFPSDRDKLGGLNPEAGVKTKFLMELIQLSEAMSEKVLVFSQYLRPLTFV
MNQLKSHFNWTEGNEVLYINGKNDAKERQSSINVFNDPSSNIRVLLASTRACSEGINLVG
ASRVVLLDVVWNPSVERQAISRAHRLGQEKVVYVYHLIVFGTKEEKKYYRQVEKDLLSEL
VFSSSDMSDDQQKLSPSDLQDKILEEMVQHEKLKHMFEKIAYQHKESKLIETFTLLEKRS
VISSSSS
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgatggactatagcttgcctatagcgaagagaaccaggcaagggagagccctaatttac
gaggagtaccatgagaagaagaagaaggagaagaggaaggataataatggggttgactcg
gtcactccaagcgtacccagtagaggtaataggaagaaattggcggagatggttcaaggc
attagctggtctgagagattaggggctaactgtaaaatgaagactcagagtgagactgtt
tctatgcctggtagaagtgaggaggccagtgtggaagagattcgtgtgaatgattgcgca
gaagaaggcagtgaatcgatgaatttggtgggcagggagagtcaggggttgaagaataag
gaatgttctaagatggaatttgagggaatggataatgtggatgagattatggtggatgat
agcgaggaagatgtggtgtttttggctgaaggggtaggtttggactgcgtgaactcgaat
tcttcgagactgacattggggttgctgagagatgagggtgttgtttgtattgatgctgat
gatgagactgatttgagtgtgaaacatgtgaatgaaagtggtgttttgaattacaatggg
gtgagggatagtgatgaaatgatttcatcgttgaagggaaaagttgagagtagttgctta
atttttaatgatagggatagtaagggtacggcggccaggactcggtcgcggttcagattg
ttgaaaaggaatgagaatgaggatggtggtgatgatgctgcatcggctttttcgaagagg
aataatgataaggatgttggtgacaatgttctctctgattggctgagaaggaatgtggat
gaagatgatggtgatgaatttattttggagacatcattggaatcgtcctctagtgaagat
gacaatgatgatgacgattatgaagcggaacaattgcaaagctgcgggggttccaagaag
ttcagttcgaatagcagtagtcaagaggatgaggaagaggaagttgctgcagaaagcaag
aatatgaacagaggacgtaaaaaaagaggaaggcctaaaagagttgacgctggggtcaag
atgaggagatatggattggactttgtggtgtatagtgacagatatatcgacgttaataat
cacgaagagggttctgttaatgtgcttcatgattatgtagcaaaacgaacccgttcccat
tttatttcaaaatggagaaagaagaaaatgaagcttggaacttttagtcaccctttatgt
gttgatgaggaggaaatagagtcttcatctggacatgatgacagtaatgaaggcggtgat
gatgcttatgagaatgaagatgatttcagtgatgacgaggcttatcatgctggcaagaaa
actgtgtctactagaagcaaatataagagtgacaaaggtaatcgtggtgaacgtgtgcaa
tccaccaagaggatgcccaccaaatgtaagggcatccgctgggaaaaaagttgtaatgtc
atgaagattcttatagattccattttggacaaggaagaagttcgtctagaagagttggct
tcttctggagatgaggcttgcaaagatgaaagcaatccatcagttgccgagacgcatcta
cccctgaagttcacgtttggaattgaggagtcaaattcaccaaagaaatcagaagatgat
aagaaaatggatgaactttgggctgagcttgagcttgcactcagagctagtgaaattggt
tcgatcgattctgttaaggttgaaaatgaagatgcccttcctccagaggacgatgttgat
agcgctaccctttgccacctagggaatcatcagattattcttgatgaacaagttggattt
agatgtgcattttgctcttacgtcaaaatggagatcaagtatattctaccatcttttagt
acacatccttgtggaaaatcagactggagggactcagggggggcaatgaatcactccatc
tttgatgagcttggttctcaagattctctttgcgattcctaccatgactgtggatcccga
gagcatgctgaaggcacagtgtgggacatcattccaggaataaaaagtagtatgtactcg
catcaacgtgatggttttgaatttatttggaagaacatagctggaggaatttatcttgac
gagttaaaaaaccaaactactttctctggtggaaatgggtgcattatttctcatgctcct
gggaccgggaagacccggttgacagttgtttttctccaggcatacatgagcttgaatcca
ggatgtagaccactagttattgctccttgcagcatgctccttacatgggaagaggaattt
caaaagtggaaatttaacattccctttcacaatctgaacaagccagagctgtctggcaag
gaaagtaagttcgctgattacattgtgaggcaagttggacacctggagaaaacagatatc
cgtatcttgaagttgtattcctggaaaacggatagaagcattctagggatgagttacaaa
ctgtttgtaaaacttactggtgagagaaagggtgaattgaaggtaagtaagcaacatgct
cacctcagaaaaatcctccttgagcttcctggtattgtagtcctcgatgaagggcacata
cctcggaattctgacagccatattctgcaggctttgtcaaatatcaaaacagaaaagcga
gtaatcctttcaggaactccttttcaaaacaattttgatgagctatataatactctctgc
cttgcaaggccaaagtttgcaaacataagacatcgatggggctctcttacaagttccatt
accaaagccactgatgacaggctgaaatgtgagaaactgaagaaggttagagatatgatt
gagccatttgtgcatgtacacaaaggttccatactacaggagaaacttcctggattgagg
gactctgtggttatattgaagccagcccaactgcagaagagcctctttgatgaactcagt
cattatgctaaagggaaccattttaaatttgagcattatgagtctttgatatctgtccat
ccttcaatcttgcttaagtgtggggggaaggagtttccttctgaccgggataagttagga
ggattgaatccagaggctggagtaaaaacaaaatttttaatggaactcatccagcttagt
gaggctatgagtgagaaagtattggttttcagtcaatatcttcgtccattgaccttcgtg
atgaatcagcttaagtctcattttaattggactgaagggaatgaggtgctgtatataaat
ggaaagaatgatgcaaaggagcgccaatcctcaattaatgttttcaatgatcccagtagc
aacattcgggtattactggcatcgacaagggcttgttctgaaggtataaatctggttggg
gcttcaagggttgttttattggatgtggtatggaatccatcggtggaaagacaagctata
agccgtgcgcataggctagggcaggaaaaagtagtgtatgtttaccatctcattgtcttt
gggacaaaggaagagaagaaatattataggcaagttgagaaggacttgttgtctgagttg
gtattctcttcttctgacatgagtgatgaccagcagaaactctcaccttcagacctgcag
gataaaattttggaagaaatggttcaacatgagaaacttaaacatatgtttgagaagata
gcataccaacataaagagtccaaactaattgagacgtttaccttgttggaaaagcgatct
gttatatcatcatctagttcttga
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