Carya illinoinensis (pecan): 122281169
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Entry
122281169 CDS
T08745
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03030
DNA replication
cill03420
Nucleotide excision repair
cill03430
Mismatch repair
cill03440
Homologous recombination
cill03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122281169
03420 Nucleotide excision repair
122281169
03430 Mismatch repair
122281169
03440 Homologous recombination
122281169
03460 Fanconi anemia pathway
122281169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cill03000
]
122281169
03032 DNA replication proteins [BR:
cill03032
]
122281169
03400 DNA repair and recombination proteins [BR:
cill03400
]
122281169
Transcription factors [BR:
cill03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122281169
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122281169
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122281169
MMR (mismatch excision repair)
122281169
DSBR (double strand breaks repair)
HR (homologous recombination)
122281169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
122281169
NCBI-ProteinID:
XP_042948420
LinkDB
All DBs
Position
11:10438090..10442145
Genome browser
AA seq
638 aa
AA seq
DB search
MAISVTPEAVSTILSNPSPESSSDVPDLVVQVVDLKATGTSGNRFMFSASDGERKLRAIL
PSNMSTEVMSGNIQNLGLIRILDYTLNDIPNKPDKYLIVTKCEVVSPPLEMEIKTEVKLE
TEIKSECRSEGTGILLKPKQENEIKTEMKSEGPGILLKTKQEIVAKSAAQIVHEQRENMA
PAARMSMTRRVFPLVSLNPYQGSWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEEGTQ
IQATMFNEAAKKFFDRFQLGKVYYISRGTLKLANKQFKTVKNDYEMTLNENSEVEEAGNE
EAFVPETKFNFVQIDQLGPYVNANELVDIIGVVQNVSPTMSIRRKSNNETIPKRDITVAD
ETKKTVVVSLWNEHATNLGQELLDIAEKSPIVAIKSLKVGDFQGVSLSAISKSIVLVDPD
IPEAKKLRSWYDSEGKESSMASVSSGMSPSSRNGSRSMYSDRVSISYITKNPSLGEDKPV
FFSIRGYISFIRPDQTMWYRACKTCSKKVTEALGSGYWCEGCQKNEEECRLRYIMVVKIS
DGSGEAYFSTFNEEAEKIVGCSADELDKLKSQMEEENSYQLKLKQATWNPYLFRVSVAQH
EYNNDKKQRITVRAVAPVDFAAESRFLLEEISKMRVPK
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcaatttccgtgaccccagaggcggtctcgactatactatcaaacccgtcgccggaa
tcttcctctgatgttccggatctcgttgtccaagttgttgatctcaaggccaccggtact
tcgggtaatcgtttcatgttttcagctagcgatggagagaggaagctaagagcgattctg
ccatcgaatatgagtactgaagtgatgtcgggaaatattcaaaacctgggtctcatccgc
atccttgattatactctcaatgacattccgaataagcctgataaatacctaattgtcacc
aaatgcgaggtagtttcccctccgctcgaaatggagatcaaaactgaggtcaagctagaa
acggagattaagtccgagtgccggagtgagggaactggcattttgttgaaaccaaagcaa
gaaaatgagataaagactgagatgaaaagtgaaggacctggcattcttttgaagacaaag
caggagatcgttgcaaaatcagctgctcagatagtacacgagcaacgggagaatatggcc
ccagctgcgcggatgtccatgactcgaagagtttttcctttggtatccttgaacccatac
caaggcagttggaccataaaggttcgtgttacaagcaaagggaatatgcgtacatataag
aatgctagaggagaaggctgtgtcttcaacgtggagttaacagatgaagaaggcacacag
atacaagcaacaatgttcaatgaagctgcaaagaaattctttgacaggtttcaattaggg
aaggtttattatatttcaaggggaactctaaaacttgccaacaagcagtttaagacagtg
aaaaatgattatgagatgaccttgaatgagaattcagaggtagaagaggctggcaatgaa
gaagcttttgttcctgaaacaaaattcaattttgtccagatcgatcagttaggtccttat
gtcaatgctaacgagcttgtggatattattggagttgttcaaaatgtgtctcctacaatg
agcattcggaggaagagtaacaatgagacaatcccaaagcgtgatattactgttgctgat
gagacgaaaaagacagttgtggtctccttgtggaatgagcatgcaactaacttagggcag
gaattgttggatattgctgagaaatctcctatcgttgcaattaagtccctaaaagttggg
gactttcaaggcgtatctttgtcagcgattagcaaaagtatagtacttgtagatccagat
ataccagaagcaaagaagttgagatcctggtatgattccgagggtaaagaaagttcaatg
gcttctgtcagctctggtatgagcccatcatcaaggaacggatcgaggtcaatgtactcg
gaccgagtctccatttcttatatcaccaaaaacccatccttgggcgaggacaagcctgtg
tttttcagcattagaggatatatcagcttcatcaggcctgatcaaacgatgtggtaccgt
gcttgcaaaacttgcagcaaaaaagtgacagaggctttggggtctgggtattggtgtgaa
gggtgccagaaaaatgaggaagagtgcagattaaggtacataatggtggtcaaaatttct
gatgggagtggtgaagcatatttctctacttttaatgaagaagcggagaaaattgttggg
tgctctgccgatgaactggataagctgaaatcccagatggaagaagagaattcataccaa
ctgaaactgaaacaagctacatggaatccttatcttttccgggttagtgttgctcagcac
gagtacaataacgacaagaagcagaggatcacagtccgggctgttgctccagttgatttt
gctgctgaatcaagatttttactggaagagatatccaagatgagagttcctaaatag
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