Carya illinoinensis (pecan): 122281386
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Entry
122281386 CDS
T08745
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
cill04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122281386
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122281386
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cill01009
]
122281386
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122281386
03036 Chromosome and associated proteins [BR:
cill03036
]
122281386
Protein phosphatases and associated proteins [BR:
cill01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122281386
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122281386
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122281386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
WD40_WDHD1_1st
WDR55
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD_LRWD1
Cytokin_check_N
Motif
Other DBs
NCBI-GeneID:
122281386
NCBI-ProteinID:
XP_042948758
LinkDB
All DBs
Position
11:complement(4086901..4101518)
Genome browser
AA seq
508 aa
AA seq
DB search
MTLSSDSRTPLEWKFSQVFGERPHGEDVQDVDVISTIAFQKSGDYLAVGDRGGRVVIFER
KDEKDTSNQHLSRDELEQLDFSFTHHPQYQYKTEFQSHEPEFDYLKSLEIEEKINNVRWC
ATQNGSLFVLSTNDKTIKLWKVKEHRVKKVKEMDPNPLLCSENALLAERSFMNEHDKTSV
DNGHNVEWTEKMATNMLPSQGVYSKIANIEDTTRTRCRKVYAHAHDFNINSISNNSDGET
FISSDDLRINLWNLEISNQCFNIIDMKPSNMEDLTEVITSAEFHPIHCNLLAYSSSRGFI
RLVDMRRSALCDHSARILQDGGSHGFKSFFTEIIASISDIKFSNDGRHILSRDYMNLKLW
DMRMDSSPVATFKVHDHLHPKLCDLYNNDSIFDKFDCCVSGDGIHFATGSYSNLLRIFSH
GVGGAEGITIEASKSPNRKPLRGAAPRARRSSLRNLTRGFYRLGHENSSSSANEFSSNLS
SKLLHMAWHPTTNLIACAAGNSLFMYYA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgactttgagctccgactcccgcactcctctggagtggaagttctctcaggtcttcggc
gaacgacctcacggagaggacgtccaagacgtcgatgtcatatccacgatagctttccag
aagagtggtgattacctcgctgttggagatcggggtggccgtgttgtaattttcgaaagg
aaggatgagaaagatacctcaaaccagcacctttctagagatgagttggagcagttggat
tttagtttcacacaccatcctcaataccaatataagaccgagttccagagtcatgagcct
gagtttgattacttgaagagtttggaaattgaagagaaaatcaacaatgtgagatggtgt
gcaacacagaatggatcactattcgtcctttcaacaaatgataagacgattaaactgtgg
aaggtcaaggaacatagagtgaagaaagtaaaagaaatggaccctaatccacttctgtgt
tcagagaatgcacttttggctgaaaggagtttcatgaatgaacatgacaaaacatctgtt
gataatgggcataatgtggaatggactgaaaagatggcgacaaacatgttgccatctcaa
ggagtgtattccaagattgctaatattgaagacactactcgtacaagatgtcgaaaggtg
tatgcccatgctcatgattttaacatcaactccatctccaataatagtgacggcgagaca
tttatttcctcagacgaccttagaataaacttgtggaaccttgagattagtaatcagtgt
ttcaatatcattgacatgaagccctcaaacatggaggaccttactgaggtcataacatca
gctgaattccatccaattcactgcaatctgcttgcatacagtagctctagaggttttata
cgtctggttgacatgcggcgttcagccttatgtgaccacagtgcaagaatattacaagat
ggagggtcccacgggtttaaatcattttttaccgagatcattgcttccatctctgatata
aagttttcaaatgatgggcgacacatcttaagtcgtgattacatgaatctaaagctgtgg
gacatgcgtatggattcatcaccagttgcaacattcaaggttcatgaccacttgcacccc
aagttatgcgacttgtataataacgactccatatttgataaatttgactgttgtgtcagt
ggagatggaattcattttgcaactggatcttatagcaatcttttacgtattttctcccat
ggtgttggaggtgcagaagggatcactatagaagctagcaaaagtcccaacaggaagcca
cttcgtggtgctgctccaagggctagaaggtcatccttacgcaatctgacacgtggattt
tatcgccttgggcatgaaaactcaagctcgagtgctaatgaattttcttctaacttaagc
tccaagctgctacatatggcatggcatccaacgacaaacttaattgcttgtgctgctggc
aatagcttgttcatgtactatgcatag
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