Carya illinoinensis (pecan): 122281416
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Entry
122281416 CDS
T08745
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122281416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122281416
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122281416
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122281416
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
nSTAND3
AAA_30
T2SSE
AAA_16
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122281416
NCBI-ProteinID:
XP_042948805
LinkDB
All DBs
Position
11:9589413..9633343
Genome browser
AA seq
1057 aa
AA seq
DB search
MGSENNLKTWVSDKLMSLLGYSQPTLVQYVIGLSKQAVSPADVLVKLVEFGLSSSSETRA
FSEEIFARVPRKSSGVNLYQKQEREAAMLAKQQKSYAILDADDDDDDNDVGGNVDHKSST
AAAPEARKVDTRRKRFRKRIESQEDEDGDDEVIAQRETKRQAKRRTSEDEDDGSESEEER
LRDQREREQLERNIRERDAAGTRKLTAPKLTRREEEEEMRRSNALEQNGMETLRKVSRQE
YLKKREQKKLEELRDDIEDEQYLFDGVELTEAERRELRYKKEIYELVKKRSEEADDTSEY
RMPDAYDQDGVVNQEKRFAVALQRYRDPSAGDKMNPFAEQEAWEEHQIGKATLKYGSKNK
KQISDDYQFVFEDQIDFIKASVMDGDNLDNEEPIELLEKSLAKSALEKLQEDRKTLPVYP
YREQLLQAVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAAR
VSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHE
RTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYT
KAPEADYLDAAIVTVLQIHVTQPAGDILVFFTGQEEIETAEEILKHRTRGLGTKIAELII
CPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRT
GMESLLVAPISKASANQRAGRSGRTGPGKCFRLYTAYNYYNDLDDNTVPEIQRTNLANVV
LTLKSLGIHDLLNFDFMDPPPSEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPML
SKMIVASDKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHLALLK
VYNSWKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELMADPSDLDAIKKAI
TSGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTE
LKPEWLVEIAPHYYQLKDVEDSGTKKKPLVEGRGLKD
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgaaaacaatttgaagacatgggtatcagataagttgatgtcgctgctggga
tattctcaacccactcttgttcagtatgttatcggactatctaagcaagcagtttcacca
gctgatgtgttggtcaagcttgtggaatttggactgtcttcatcaagtgaaacccgtgca
ttttctgaagaaatctttgctagagtgccacgtaaatcatctggtgtaaatctttatcag
aaacaagagagggaagctgctatgttggcaaagcagcagaagtcttatgcaattttggat
gctgatgatgatgatgatgacaatgatgtgggaggtaatgttgatcataaatcttccact
gcagctgctcctgaagccagaaaagtagatacccgtagaaaacgtttcaggaagaggatt
gaaagtcaagaagatgaagatggagatgatgaggtaatagcacaaagggaaacaaagaga
caggctaaaaggcgaacttctgaggatgaagatgatggttcagagtcagaggaagagaga
ttgcgtgaccaaagagagagggagcaattagagagaaatataagggagcgagatgcagca
gggacacgaaagctaactgcgccaaagttaacacgaagggaggaagaagaggaaatgagg
agatctaatgctttggagcaaaatggcatggaaactttaaggaaagtgtcaagacaagaa
tacctaaagaaaagggagcaaaagaaacttgaggaattaagagatgatatagaagatgaa
caatatctatttgatggcgttgagcttaccgaagcagaacggcgtgagttaaggtacaag
aaggaaatatatgagcttgtgaagaagcggtccgaggaggctgatgatacaagtgagtac
aggatgccagatgcctatgaccaggatggtgttgttaatcaggaaaagagatttgctgtg
gctttgcagcgttacagggacccgagtgctggggataaaatgaacccatttgcagaacaa
gaggcttgggaggagcatcaaataggaaaggcaacattgaaatatggctcaaaaaataaa
aagcaaatatctgatgactatcagtttgtatttgaggatcagattgactttatcaaagca
tcggttatggatggagacaatcttgataatgaggagcccatcgagttgcttgagaagtct
ctggcaaaatcagctttggagaaacttcaggaggatagaaaaactttacccgtctatcca
tatcgagagcaattactccaagctgttcatgatcatcaggttcttgtcattgtcggtgaa
actggttctgggaagactacacagataccccaatatcttcatgaagctggatatacaaag
cgtggaaaggttggatgtacacagccgcgacgggtcgctgctatgagtgttgctgctcga
gtttcgcaagaaatgggtgtcaaacttgggcatgaggttggttattccatccgttttgaa
gattgtacatcagaaaagactgttctgaaatatatgactgatgggatgttgttacgagaa
ttccttggtgaaccagatctggcaagctacagtgtagtgatggtggatgaggcccacgaa
agaacactctcaactgatattctatttggattggtaaaggatatttctcgttttcgccct
gatctaaagttgctcatctccagtgccacacttgatgcagagaaatttagtgattatttt
gattcagctccaatttttaaaatcccagggaggcggtatcctgttgaaatacactacaca
aaagctccagaagctgattacttggatgctgctatagttactgttctccagattcatgtg
acacaaccagctggagatatattagttttcttcactggtcaagaagagattgaaacagcc
gaagaaattttgaaacacaggacaaggggactggggacaaagattgccgaactgattatc
tgcccaatatatgcaaacctaccaactgaacttcaagcaaaaatatttgaacccactcct
gaaggagcccggaaggttgttcttgcaaccaatatagctgaaacctccttgactatcgat
gggatcaagtatgtaattgatccaggcttctgtaaaatgaaatcctataatccaagaact
gggatggagtcattgctggtcgctccaatctctaaagcatcagctaatcagagggcaggt
cgatctggacgaacaggtcccgggaaatgcttccgattatatactgcttacaattattac
aatgatttggatgacaatactgtgcccgaaatacaaaggacgaaccttgcaaatgttgtc
cttactcttaagagccttggcatccatgacttattaaattttgattttatggacccacca
ccatcagaagcattattaaaagcgctggaactactctttgcactgagtgcgttaaataaa
ctaggtgagttgactaaagtaggcagacggatggcggagttccctcttgatcccatgtta
tccaaaatgatagttgcttccgacaagtacaaatgctcagatgagatcatttccattgct
gccatgctttctgttgggaattcaatcttttatcgcccaaaggacaaacaagtccatgct
gacaatgcacgaatgaattttcacactggaaatgtgggggaccaccttgcattgctgaag
gtctacaattcatggaaggagacaaattactccacacagtggtgttatgaaaattatata
caggttaggagtatgaaacgtgcaagggatgttcgagatcagcttgaagggctcttggaa
agggttgaaattgaactaatggccgaccccagtgatttagatgccataaaaaaagctata
acatctggttttttcccacactctgcaaggcttcaaaagaatggatcttacaggaccgta
aaacatccacagactgttcacatacaccccagctccgggctggcacaggtccttccgaga
tgggttgtatatcatgaattggttttgacgaccaaggagtatatgagacaggtgacggaa
ctaaagccagagtggttggttgaaatagccccgcactattaccagcttaaggatgttgaa
gactcgggtacaaagaaaaagcctcttgtggaagggcgtggattaaaggactag
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integrated database retrieval system
