Carya illinoinensis (pecan): 122281536
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Entry
122281536 CDS
T08745
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122281536
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cill01009
]
122281536
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122281536
03036 Chromosome and associated proteins [BR:
cill03036
]
122281536
Protein phosphatases and associated proteins [BR:
cill01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122281536
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122281536
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122281536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ComGF
Motif
Other DBs
NCBI-GeneID:
122281536
NCBI-ProteinID:
XP_042949037
LinkDB
All DBs
Position
1:50222670..50235971
Genome browser
AA seq
511 aa
AA seq
DB search
MNGGDEVVAAPVGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGG
RVVLFERTDTKDNVGSRRDLERIDYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK
IRWCQTANGSLFLLSTNDKTIKFWKVQEKKIKKISDMNLDPLKGVGNGSVASSSNSVNPK
SYLANGGFPDRLSNDFSFPPGGIPSLRLPTVTSHETSLTARCRRVYAHAHDYHINSISNN
SDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAYSS
SKGSIRLIDLRQSALCDSHAKLFEELEIPGSRSFFTEIIASISDIKFGKDGRYILSRDYM
SLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLF
RVFGCASGSTEATTLEASKNPMRRQAQTPARPSRSLSSSITRVVRRGAESPGADANGNSF
DFTTKLLHLAWHPSENSIACAAANSLYMYYA
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtggcgatgaggtcgtcgcagctccggtaggcccgcctcaaccgctggagtgg
aaattctctcaggtatttggggaacgcacggccggtgaagaagttcaggaagttgatatc
atttcagcaatcgaatttgacagaactggtgaccatcttgctactggtgaccgtgggggt
cgggtggttctctttgagagaactgatacaaaagataatgttggctccagaagagatttg
gagaggatagattatccaattagtaggcatcctgagttccgttacaaaaccgagtttcag
agccatgaacctgagtttgactatctcaagagcttggaaatagaggagaaaatcaacaaa
attagatggtgccaaacagccaatggttccctttttcttctctctacaaatgacaaaaca
attaaattttggaaggtccaagaaaagaagatcaagaaaatttctgatatgaatttggac
cctttaaaaggtgttggaaatggcagtgttgctagttcgagtaattcagttaaccctaag
tcatatcttgcaaatggaggattcccagacagattgagtaatgacttctcattcccacca
gggggcattccatcattacgtttaccaacggtaactagccatgaaaccagcctcacggct
agatgtcgaagggtatacgctcatgctcatgattatcacatcaattctatttcaaataac
agtgacggtgaaacttttatatctgcggacgatcttcgaataaatctttggaacttggaa
attagcaaccagagtttcaatattgtggatgtcaagcctacaaacatggaggatctgact
gaggtgataacatcagcagaattccaccctactcattgtaatatgttagcatacagtagt
tcaaaaggctcaatccgtctaattgatttgcggcaatcagctttatgtgattctcatgct
aaattgtttgaggaactggaaatacctggttctagatcatttttcacggagataattgct
tcaatctcagatattaaatttggaaaggatggaagatatatacttagtcgtgattacatg
tctctaaagttatgggacatcaatatggattcgggtccagtttcgaccttccaggttcac
gaatatttaagaccaaagctctgtgatttatatgaaaatgattcgatctttgataaattc
gagtgttgtttgagtggtgatggattacgggttgcaacaggttcttatagcaatctattt
cgtgtgtttggttgtgcctcaggaagtactgaggcaacaactttggaagccagcaaaaac
ccaatgaggcgccaagcacagacccctgcaaggccttccagatccctgagcagtagtata
acaagggttgtcagacgaggagcagaaagccctggggcagatgcaaatggaaattcattt
gattttacgacaaagttgctgcacctagcatggcacccaagtgaaaactcgattgcctgt
gctgctgcaaacagcttatacatgtactatgcataa
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