Carya illinoinensis (pecan): 122281548
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Entry
122281548 CDS
T08745
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03030
DNA replication
cill03420
Nucleotide excision repair
cill03430
Mismatch repair
cill03440
Homologous recombination
cill03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122281548
03420 Nucleotide excision repair
122281548
03430 Mismatch repair
122281548
03440 Homologous recombination
122281548
03460 Fanconi anemia pathway
122281548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cill03000
]
122281548
03032 DNA replication proteins [BR:
cill03032
]
122281548
03400 DNA repair and recombination proteins [BR:
cill03400
]
122281548
Transcription factors [BR:
cill03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122281548
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122281548
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122281548
MMR (mismatch excision repair)
122281548
DSBR (double strand breaks repair)
HR (homologous recombination)
122281548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
DUF223
zf-CCHC_2
NGO_1070-like
DUF936
BRCA-2_OB1
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
122281548
NCBI-ProteinID:
XP_042949063
LinkDB
All DBs
Position
11:complement(32156933..32165073)
Genome browser
AA seq
873 aa
AA seq
DB search
MAINLTEGAIMMMCRGEMKAEEVKPVLQVIDVKQVSTQAQQHTERFRVLLSDGSHHQQGM
LATQMNALVKEGKLQKGSVVQLTQFVCNVVQNRMIIIIVDLDLILEKMDLIGEPVSAPRN
VAVQSSIAQPGMQTGNLSSFASSSPAGQASKPNMAEASMEHPRINQSHGNTYPTNSDSGR
YAASNAPSMYPKVESSTGFPGSASLNGSYSGQNTIFRNPKPEALWPPLNTSVRQPQSGYQ
PPPPMYTNRGPVARNEAPPRIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFS
FDLLDSDGGEIRATCFNAVADQFYNQIEAGKVYLISKGSLRPAQKAFNHLQNDHEIFLES
ISIIQPCFEDDTTSTIPQQQFHFRPISDIEGMDSNSIVDVIGIVSSISPPASIMRKNGTE
TQRRILHLKDMSGRSVELTLWGNLVNAEGQRLQNMCDSGVFPILAVKSGRVNDFNGKAVG
TISTSQLFIDPNFPEAHRLKDWFDKEGRSIPSVSISRETSVGKTDSRKTISQIKDERLGT
SEKPDWITVSATISFVKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSIEECD
YRYILQFQIQDHTGLTWVTAFQECGEEIMGMPAKSLYYLKYEEQDDDKFGEIIRKVLFTK
YIFKLKVKEETYSDEQRVKSTVVKAEKVDFASESRFVLDLMEKLKAGNYSSFASNTESIS
PNPGMSGTVVGNIGNRQPTPSMNYTGNSSNAGKDFRVPSHQAGRYGNQYNSSIAAAIGTP
GSYPFCNSCGGTGHSSTNCPSIMSSPALGGNYPSRVSSEPGVGSSSGECFKCHQPGHWAR
DCPGLSTVPPAYGSSGVITGRYGGASKQQFGGF
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggcgataaatctgactgaaggtgcgataatgatgatgtgccgcggggagatgaaggcg
gaagaggtgaagccggtgctccaggtgatcgacgtgaagcaggtgagcactcaggcacag
cagcataccgagaggtttagggtcttactctccgatgggtctcaccatcagcaagggatg
ctggccacgcagatgaatgctctcgtcaaggaagggaagttgcagaagggctctgtcgtc
cagttgactcagttcgtctgtaacgtcgtccagaaccgcatgattataatcattgttgat
ttggatttgatactggaaaaaatggatctaattggagaacctgtatcagctccaagaaat
gttgctgtacagtcctccatagctcaaccagggatgcaaactgggaatctctcatctttt
gccagcagttcacccgctggtcaggctagtaaaccaaacatggctgaggcatccatggag
catcctagaataaaccaatcacatggcaatacttatccaacaaattccgattcaggaaga
tatgctgcatctaatgcaccttccatgtaccctaaagtggagagtagtactgggtttccg
ggatcagcatccttaaatgggtcatatagtggtcagaacacaattttccgtaaccccaag
ccagaagctttgtggccacctctaaatacctctgttcgtcaacctcagtctggatatcaa
ccaccacctccaatgtacactaacagaggaccagtagctagaaatgaagctccccctagg
ataattcccattgctgctctgaatccataccagggcaggtggacaattaaggctagagtt
acagcaaaaggagaacttaggcactacaataatccccgtggtgatggtaaagtattctct
tttgatcttcttgattctgatggtggggaaattagggcaacttgctttaatgctgtggct
gatcaattctacaaccagattgaagctggtaaggtctatctgatttccaagggaagttta
agacctgctcaaaaggctttcaaccacctccaaaatgatcatgaaatttttttagagagc
atttcaataatacagccttgctttgaagatgataccacaagcacaattccacagcagcag
tttcacttccgtcccataagtgatattgaaggcatggacagcaacagcattgtggatgta
attggtattgtgtcttctatcagtccccctgcttcaataatgagaaaaaatggtactgaa
actcagaggagaatcctacacttgaaggacatgtctggccgaagcgttgagttgactctg
tggggaaaccttgtaaatgcagaaggacagagactgcagaacatgtgtgattcaggcgtt
ttccccattctggctgttaaatctggtagagttaatgacttcaatgggaaggcagtgggg
accatctctaccagtcaactatttatagaccccaattttcctgaggctcacaggctgaaa
gattggtttgacaaggaaggaaggagcatcccatcggtctctatttccagggaaacaagt
gtgggtaagacagatagtcgcaagacaatatctcaaatcaaagatgagaggctcgggaca
tctgagaagccagattggatcactgtcagtgcaaccatttcatttgtaaaggttgacaat
ttttgttacacagcatgtcctatcatgattggtgatcgacaatgcaacaaaaaggttaca
aataatggggatgggaaatggcggtgtgataggtgcgatcagtccatcgaggagtgtgat
tacaggtatatacttcagttccagatacaagaccatacaggcttaacatgggtaactgca
tttcaggaatgtggtgaggagataatgggtatgcctgcaaaaagtttgtattatttgaag
tatgaagagcaagatgatgataaatttggagaaataattcgtaaggttctatttacaaaa
tatatattcaagttgaaagtaaaggaggagacatacagtgatgaacaacgagtaaagtca
acagtggtcaaagcagaaaaggtagattttgcatctgaatccagatttgttttggattta
atggaaaagcttaaagcagggaactatagttcttttgcttcaaatacagaaagtatctct
cctaaccctggaatgagtggtactgtagttgggaatattggaaataggcaaccaactcca
tcaatgaactatactgggaacagtagcaatgctggcaaagacttcagagtaccatcacac
caagctggtcggtatgggaaccagtataatagttctattgctgctgcaattggcactcct
ggttcatatccattctgtaacagttgtgggggtactggtcatagctccacaaattgcccc
agtatcatgagtagtcctgcattaggagggaactatcctagtagagtttcctctgagcca
ggtgttggcagctcctcaggcgaatgcttcaaatgccatcaacctgggcattgggcaaga
gattgtccagggttgagcactgtacctccagcttatggaagcagtggtgttataactggt
agatatggtggagcttcaaagcaacaatttggtggcttttaa
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