Carya illinoinensis (pecan): 122281593
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Entry
122281593 CDS
T08745
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122281593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122281593
03036 Chromosome and associated proteins [BR:
cill03036
]
122281593
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122281593
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122281593
PBAF complex
122281593
GBAF(ncBAF) complex
122281593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
122281593
NCBI-ProteinID:
XP_042949154
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All DBs
Position
11:849358..854110
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AA seq
557 aa
AA seq
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METTPHDPTSKPDEPELDLYTIPSHSSWFLWDEIHETEKLALREFFDGSSFSRTPKIYKE
YRDFIINKYREEPSRRLSFTDVRKSLVGDVSLLHKVFKFLDERGLINFGAPSGSNTSLVV
VEDGEDRSRIKIESVVPNAVRVGASPNSPKPICVPPNVVDNAVESGFKFLPLASYSDVFG
DLVKPKGLICGNCGGICDSGHYKYTKGEFIICINCFKSQNYGENRSMDEFKLNECAENKG
SNGAIWTEAETLLLLESVLKHGDDWELVAQNVQTKSKVDCILKLIELPFGELVLGSAHKY
GNYGGLNGSMNGTKQVQLSSFERHEAIRLEGQCHEQINEREENGDTVDQGHPSKRQRIAS
LSDAGSSLMKQVARISTMVGSQITAAAAEAAVTALCDENSFPREIFDVEEDHISNGLSSP
TASYEAERVLKNEESKTKEGLTQSETANTPHKRDDIPLALQIRASIATALGAAAARAKLL
AEQEDREVENLVAIIIETQMKKLHHKIKHFEDLELIMEKEYAEMEELKDCLLAERIGVLQ
KAINAGISRWRDHSVKS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccacaccacatgacccgacttctaaacccgacgaaccagagctcgacctctac
accattccaagccactctagttggttcttgtgggacgaaatccacgaaaccgagaaactc
gctctaagagaattcttcgacggaagctctttttcaaggacgcccaaaatatacaaggag
tacagagattttatcatcaataagtacagagaagagccttcgaggcggcttagcttcact
gacgtccgaaaatcgctggtgggcgatgttagcttgctccacaaggtttttaagttcttg
gacgagcgggggttgataaatttcggtgcgccttccggtagcaatactagtttggtggtg
gtggaggatggggaggataggtctagaattaagattgagagtgttgtcccgaatgcggtt
cgagttggtgcctcaccaaattcgccaaagcctatttgcgtgccaccaaacgtcgtggat
aatgcagttgagagtggattcaaatttctgccattggcatcctattcagatgtttttggc
gatttggtgaagccgaaggggctgatttgtggaaattgtggtggaatttgcgactctggt
cactataaatataccaagggtgaattcataatttgcataaactgtttcaaaagtcaaaat
tatggggagaacaggtctatggatgaattcaagctcaatgagtgtgcagaaaacaagggt
agtaatggagctatctggactgaggcagaaaccctacttcttttagaatctgtattgaag
catggggatgactgggagctcgttgctcaaaatgttcaaaccaaaagcaaggttgattgt
atattgaaactcattgaattgccttttggagagcttgtgttgggttctgcccacaaatat
ggtaattatggtggcctcaatggcagtatgaatggaacaaaacaagtccagttatcttca
tttgaacgtcatgaagctatcagattagagggtcaatgtcatgaacagattaatgaaagg
gaggaaaatggagacactgtggaccaaggtcatccttcaaaaagacagcgcattgcatcc
ctttcagatgccggtagttcacttatgaaacaggttgctcggatctcaaccatggttggt
tctcaaatcacagctgctgcagctgaggctgctgttacagcactttgtgacgaaaactca
tttccaagagagatctttgatgttgaggaggatcatatttctaatggattatcttcgccc
actgcaagttacgaagcagaaagagtccttaagaatgaagaatctaagacgaaggaaggt
ttgactcaatcagaaactgcaaatacaccccacaagagggatgatatacctctagctctg
caaattagagcttccattgcaacagctcttggggcagctgctgctcgtgctaaattgtta
gctgagcaggaggacagagaggttgaaaatttagtggcgatcataattgaaacacagatg
aaaaagttgcaccacaaaatcaagcattttgaagatctggagctgataatggagaaggaa
tacgctgaaatggaagaacttaaagattgccttttagcagaacggattggagtcctacag
aaggcaatcaatgccggtatctctagatggagggatcactctgtaaaatcttaa
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