KEGG   Carya illinoinensis (pecan): 122282030
Entry
122282030         CDS       T08745                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03013  Nucleocytoplasmic transport
cill03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122282030
  09122 Translation
   03013 Nucleocytoplasmic transport
    122282030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cill03019]
    122282030
   03041 Spliceosome [BR:cill03041]
    122282030
Messenger RNA biogenesis [BR:cill03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     122282030
Spliceosome [BR:cill03041]
 Complex C
  Other components
   EJC/TREX
    122282030
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    122282030
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_Vps41 DSE1_N Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_EML NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_WDR75_1st WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_HPS5 Tricorn_2nd WD40_MABP1-WDR62_1st TRM82_WD Beta-prop_IFT80_2nd PAC11 Beta-prop_WDR41 Beta-prop_Nup120_160 DUF7099 CNH TP_0598_N WD_LRWD1 Beta-prop_ACSF4 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 122282030
NCBI-ProteinID: XP_042949873
LinkDB
Position
11
AA seq 313 aa
MEATLPFKNLHSREYQGHKKKVHSVAWNCSGTKLASGSVDQTARVWHIEPHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFRPIHKRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSL
RPLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISQMLCERTFTKLEWPVRTISF
NYTGDYIASASEDLFIDISNVRTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFESA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaggcaaccttacctttcaagaatctccatagccgagagtatcaaggtcacaagaag
aaggtgcattcggtcgcttggaattgctcaggcacgaagctcgcttctggttccgtggat
caaaccgctcgtgtctggcacattgagccgcacggacacggtaaggttaaagatattgaa
ttgaagggtcacactgatagtgtggatcagctgtgttgggaccccaaacacgctgatcta
attgcaactgcgtcaggtgacaagactgtgcgtttgtgggatgctcgaagtgggaaatgc
tcacagcaggcagaacttagtggggagaacatcaacattacgtataaacccgatgggaca
catgtagctgttggcaatagggatgatgaactaacaatactggatgttcggaaatttagg
ccaatccataagcgcaaattcagctatgaggtaaatgagattgcgtggaacatgacgggg
gagatgttctttttgaccactggaaatggtactgttgaagtactagcatacccatctctg
cgaccgcttgacacacttatggctcatacagctggctgctattgtattgcaattgatcca
ataggaagatactttgctgttggaagtgctgattccttagtcagcctttgggatatatca
cagatgctgtgtgagcgaacatttacaaaacttgaatggcccgtccgcacaataagcttt
aattacaccggagattatattgcttctgccagtgaagacttgttcattgatatatcaaat
gttcgaactggacggacagtgcatcagataccatgtcgggctgccatgaacagcgtggaa
tggaatcctaaatacaatttacttgcatatgctggagatgacaaaaacaaatatcaggct
gatgaaggtgtttttagaatatttggctttgaaagcgcctaa

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