KEGG   Carya illinoinensis (pecan): 122282941
Entry
122282941         CDS       T08745                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03030  DNA replication
cill03410  Base excision repair
cill03420  Nucleotide excision repair
cill03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122282941
   03410 Base excision repair
    122282941
   03420 Nucleotide excision repair
    122282941
   03430 Mismatch repair
    122282941
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cill03032]
    122282941
   03036 Chromosome and associated proteins [BR:cill03036]
    122282941
   03400 DNA repair and recombination proteins [BR:cill03400]
    122282941
DNA replication proteins [BR:cill03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    122282941
  DNA Replication Termination Factors
   ELG1-RFC complex
    122282941
Chromosome and associated proteins [BR:cill03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    122282941
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     122282941
  Check point factors
   HRAD17(Rad24)-RFC complex
    122282941
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 nSTAND_NTPase5 AAA_22 Rad17 Mg_chelatase AAA_lid_RFC1 AAA_16 Viral_helicase1 RCF1-5-like_lid nSTAND3 AAA_11 RuvB_N AAA_5 AAA_assoc_2 AAA_28 AAA_19 DNAX_ATPase_lid MeaB AAA_25 ABC_tran AAA_30 RNA_helicase bpMoxR IstB_IS21 KTI12 AAA_3 AAA_18 AAA_7 NTPase_1 AAA_24 NPHP3_N SLFN-g3_helicase AAA_29 T2SSE DO-GTPase1
Other DBs
NCBI-GeneID: 122282941
NCBI-ProteinID: XP_042950964
LinkDB
Position
11:complement(37266530..37270657)
AA seq 334 aa
MAASSSSSSTGSGYDMPWVEKYRPNKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGT
GKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVIL
DEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILG
RLMVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP
LHVKNMVRNVLEGKFDDACYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET
GFAHMRICDGVGSYLQLCGLLAKFSVVRETAKAA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggctgcttcgtcttcgtctagcagcaccggcagtggatacgacatgccgtgggtcgag
aagtaccgacccaacaaggtcgtcgacatcgtgggcaatgaggacgccgtgtccaggctc
caagtcatcgctcgcgacggcaacatgcccaacctcatcttatccggtcctcctggaact
ggtaaaaccactagcatactggcgcttgcgcatgagcttttgggtccaaactataaggag
gctgttttggagctaaatgcatcagatgacaggggaattgatgtggtgaggaacaagatt
aagatgtttgctcaaaagaaagtaacactgccccctgggcgccacaagatagtaatcttg
gatgaagccgacagcatgacatctggagcacagcaagctttgaggaggacaatggaaata
tattcaaactccactcgttttgctcttgcatgcaatacatcttctaaaattatcgagcct
atacaaagtagatgtgctcttgttcgattttcaagactatctgatcaagagatactcgga
cgtctcatggtggttgttgaagctgaaaaggttccctatgttccagaaggtcttgaagcc
ataattttcactgctgatggtgacatgaggcaggcattgaataacttgcaagctacatac
agtgggtttcgttttgtcaaccaagaaaacgttttcaaggtttgtgatcagcctcatcca
ttgcatgtgaagaacatggtgcgtaatgtcctagaagggaaatttgatgatgcttgttat
ggtctcaagcagctctatgatttgggctattcacctaccgacataatcacgacactattc
cgtataattaaaaactatgatatggctgagtatctgaaattggaattcatgaaggagact
ggatttgcccatatgagaatctgtgatggagttggttcatatcttcagctctgtggactt
ctggccaagttttccgtggtccgcgaaacagctaaagcagcatag

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