Carya illinoinensis (pecan): 122283149
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Entry
122283149 CDS
T08745
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122283149
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cill01002
]
122283149
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122283149
03036 Chromosome and associated proteins [BR:
cill03036
]
122283149
03400 DNA repair and recombination proteins [BR:
cill03400
]
122283149
Peptidases and inhibitors [BR:
cill01002
]
Metallo peptidases
Family M67
122283149
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122283149
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
122283149
BRISC complex
122283149
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
122283149
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
122283149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
122283149
NCBI-ProteinID:
XP_042951130
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All DBs
Position
1:52027370..52034615
Genome browser
AA seq
438 aa
AA seq
DB search
MSLTCVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKNGSVTALIWGASPQTRSDRR
KDRVETNPEQLAAASAQAERMTMSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
SGFIGLIISCFSEDVNKVGRIQVIAFQSSDGKQNHVSRPLSLSPVNRSSIIDVESSLSSS
ENASAKSSSARVESPEQDTGDSTTAGGIKGGGRSTDLGVLFANADADYIGRKRMGGSYHA
DSSENVVDIDPMDMSESMQEAMHRSNLDVRGAEHVRKEIPLHILSTSSLIELESPLMSFT
DLQHVLYEEEQAAYNQAVSQNARDGKVHPLTFIHHTSTYQASMCKLMEYCLSPAINVLMD
RLKENEIQLAKLISESKSLEAEGLRAGESSSGSPRQIPYHDLRGNAAFGNRDLYSSAEPI
SMRPSVAGPGSRSRKGSH
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaacgtgtgtgaaaatgtcggaagatgtgtggttaacgtgtctgacgcatgca
ttgtccacagagaccgaagagatcatgggtcttcttctcggtgatattgagtactctaag
aatgggagtgtaactgcacttatttggggagcatcaccgcaaacacgctctgatcgcaga
aaggaccgtgtggagactaatcctgaacagttggctgctgcatcagctcaggctgagaga
atgaccatgtcgaccggaagaacaacaagagtaattgggtggtatcattctcatcctcat
attacagttcttccttcccatgttgatgtgcgaactcaggctatgtatcaacttctagat
tctgggtttattgggctgataatttcctgttttagtgaagatgtaaacaaggttggaaga
atccaagtaattgctttccaatcctcagacgggaagcagaatcatgtgtcaagaccttta
tctctatcccctgtaaatagaagttcaattatagatgttgaatcatctttaagttcctca
gaaaatgcatcagcaaaatccagctctgcaagggtagagagtcctgaacaagacactggt
gattcaacaactgccggaggtattaagggtggtggaagatccacggacttgggagttctc
tttgcgaatgcggatgctgattatatagggaggaaaaggatgggaggaagctaccatgct
gatagttcagaaaatgttgttgatatagaccccatggatatgtctgagagcatgcaagag
gctatgcaccgttcaaatttggatgtgagaggtgcagagcatgtcaggaaagaaattcct
cttcatattttgtcaacgtcatcccttattgagcttgagtctcctctaatgtcatttaca
gacttgcagcatgtgctatatgaagaggagcaggcagcatataaccaagctgtatcgcaa
aatgctagggatgggaaagtgcatcctcttactttcatacatcacacctcaacttatcag
gcttccatgtgcaaattaatggaatattgtttaagtcctgccataaatgttctcatggac
cgcttgaaagagaatgagattcagttagcaaagttgatcagtgaatccaaaagtttagag
gctgagggtcttagagcgggtgaatcaagttcaggatctcctcgacaaattccatatcat
gatcttcgaggaaatgctgcgtttggtaacagggacttgtacagttcagctgaaccgatt
agcatgaggccaagtgttgctggtcctggtagccggagcagaaaagggtctcactga
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