Carya illinoinensis (pecan): 122283595
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Entry
122283595 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122283595
09122 Translation
03013 Nucleocytoplasmic transport
122283595
03015 mRNA surveillance pathway
122283595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122283595
03041 Spliceosome [BR:
cill03041
]
122283595
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122283595
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122283595
Spliceosome [BR:
cill03041
]
Complex C
Other components
EJC/TREX
122283595
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122283595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
122283595
NCBI-ProteinID:
XP_042951165
LinkDB
All DBs
Position
1:complement(52177100..52183237)
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AA seq
427 aa
AA seq
DB search
MGEVKDNDYEEELVDFEDDDPKAPDSASARPAADSVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSALQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIRVAVFYGGVNIKIHKDILKNECPHVVVGTPGRILAL
ARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQEPMEIYVDDETKLTLHGLVQHYILLKEAEKNRKLNDLLDALDFNQVVIFVKSVHR
AAELNKLLEECNFPSICIHSGMAQEERLKRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQSRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcaaggacaacgactacgaagaagagctcgtcgacttcgaagatgatgac
cctaaggcccccgactccgcctcagctagacccgcagctgattccgtcaagaagggctat
gttgggattcacagttcgggatttagagacttcctgttgaaaccagagcttcttcgagcc
atagtggattcaggatttgaacatccatcagaagtgcaacatgagtgcatccctcaagct
atcctaggaatggatgtcatctgtcaagcaaaatctggtatggggaaaactgctgtcttt
gttctatcagctcttcagcagattgaacctgttgctggtcaagtggcggctcttgttctt
tgccacacaagagaactagcttaccagatttgtcatgaatttgagaggttcagtacatat
ttacctgacatcagggttgctgttttctacggtggtgtcaatatcaagattcacaaggat
attctaaaaaatgaatgtcctcatgttgttgttggaacacccggacgaatattggctcta
gcaagggataaagatcttggattaaagaatgtgaggcattttattcttgatgagtgtgat
aaaatgctagaatcacttgacatgaggagagatgttcaggaaatcttcaagatgactcct
catgacaagcaagtgatgatgttttcagcaactctaagtaaagagatccgtcctgtttgc
aaaaaatttatgcaagagccaatggaaatttatgttgatgatgagacaaagttgactctt
catggtcttgtacagcactacattttattgaaagaggcagagaaaaaccgcaaattgaat
gatcttcttgatgcattggacttcaatcaagttgttatttttgtcaaaagtgttcacaga
gcagctgagctgaacaagttactcgaggagtgtaacttcccctctatttgcatccattca
ggaatggctcaggaggaaaggttgaaacgttacaagaatttcaaggaggggcaatcaaga
attcttgtggcaacagacttagtaggaagggggattgatatagagcgtgttaacattgtt
atcaactatgatatgccagattcagctgatacatacctgcacagggtgggtagggctggc
aggtttgggaccaaggggcttgcaatcacatttgtctcatctgcagctgactcagatgtt
cttaatcaggttcagtcgaggtttgaggtggacataaaggagcttccggagcaaattgat
acttcaacttacatgccatcatga
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