Carya illinoinensis (pecan): 122284001
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Entry
122284001 CDS
T08745
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122284001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122284001
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122284001
Complex C
U5 SnRNP specific factors
122284001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
122284001
NCBI-ProteinID:
XP_042951193
LinkDB
All DBs
Position
1:complement(52360315..52373193)
Genome browser
AA seq
2348 aa
AA seq
DB search
MWNNGQIAPPGTTGSSIPPPPAAQPSYTVLPSPAEAEARLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKILYHISGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVCTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITSTNKERHEKKSRDEEDDDDFSLPEGVEPFLNDTQLYTDTTAAGVSLLFAPR
PFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARVI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQGVWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLQQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIW
PSLNDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMP
PQWGTHQQVNLPAALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKILENNKQWDG
EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMIPDNGPWNYNFMGVKHAPSMKYGVKLGAPREYYHEDHRPTHFLEFSNLEEGETIAV
GDREDTFS
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattgcgccgccagggaccactgggtcctcgataccgcctcca
cctgcggcgcagccctcgtacacggtgctaccatcgccggccgaagcagaggctcgactc
gaggagaaggcgaggaaatggcagcagctcaattcgaagcggtacagcgacaaacgcaag
tttgggtttgtcgagacgcagaaggaggacatgccacccgagcacgtcaggaaaattatc
agagatcatggggacatgtcctcgaagaaatatcgtcatgataaacgtgtctatcttgga
gcccttaaattcattccgcatgcagtttacaaacttcttgaaaatatgcccatgccatgg
gagcaggttcgtgatgtgaagattttgtaccatatttctggggcaattacatttgtgaat
gaaataccatgggttgtagaacctatatatctggctcagtggggctcaatgtggatcatg
atgcgaagggagaagagagatcgtagacatttcaagagaatgcggtttccaccatttgat
gatgaagaacctccactagactatgctgataatcttttagatgttgatcctctggagcct
atccaattagagttggatgaagaggaggattctgctgtatgtacttggttttatgaccac
aagcctcttgtgaaaacaaagctgataaatggtccaagttaccggaaatggcatctctcg
cttcctataatggcaacgcttcatcggcttgcaggacagctcctttctgatttaattgat
cgcaattatttctacttgtttgacatggagtcattttttacagccaaagcgttaaacatg
tgtatacctggtggacctaaatttgagccattgtaccgtgacatggagaaaggagatgaa
gattggaatgagttcaatgatattaacaagctgattattagatcacctctcaggacagaa
tacagaattgcatttccccatctctataacaataggccccgaaaagtaaagctttgtgtg
tatcacactcctatgatcatgtacataaagactgaggatcctgatttacctgcattttac
tatgatcctttgatacacccaataactagcactaacaaggagcggcatgaaaagaaaagt
cgtgatgaggaggatgatgatgattttagcttgccggaaggagtggaaccttttctgaat
gacactcaactttataccgacactacagctgctggtgtctccttactatttgccccacgc
ccttttaacatgagatctggccggatgagacgtgcagaagatataccccttgtgtcagag
tggtataaagagcattgtcctccatcctatccagttaaagttcgggtcagctatcaaaaa
ttgctaaaatgctttgtgttgaatgaactgcatcacagacctcccaaggctcaaaagaag
aagcacttattccgatctttgcaagcaacaaagtttttccaaacgacagaacttgactgg
gctgaagctggtcttcaagtttgtaagcagggctataacatgctaaatctgcttatacat
aggaaaaatttgaattacctccacctcgattacaattttaacctgaagcctgtaaagacc
ctcactacaaaagagcgaaagaaatcacgttttggtaatgctttccatctttgccgtgaa
attctgcgtttgacaaagcttgtagttgatgcaaatatccagttccgcttgggtaatgtg
gatgctttccaattggctgatggtttgcaatatacattctctcatgttggtcaactgact
gggatgtaccgatataagtacaggcttatgcggcagatcagaatgtgcaaagacttgaaa
cacttgatttattatcggttcaacactggtcctgttgggaaaggacctggatgtgggttt
tgggcaccgatgtggagggtgtggttgttctttcttcgtggtatagtgccactcctcgaa
cggtggttagggaatttacttgcgcgtcaatttgaagggcgccattcaaaaggagtggca
aaaactgttaccaagcaacgtgttgaaagccattttgatttggagcttcgagcagctgtt
atgcatgatgttcttgatgccatgccagagggcatcaagcagaataaagctagagtgata
ttgcagcatctcagtgaggcgtggcgatgttggaaagcaaacattccctggaaggttcca
ggtttgccggtccccattgagaacatgattcttcgatatgtcaaatcaaaagcagactgg
tggacgaatgttgctcactataatcgtgagcgtataaaaagaggagcgacggttgataag
acagtttgtcggaagaatcttgggagactgactcgcctttggcttaaagcagagcaggaa
cgacaacacaactatttgaaagacggcccatatgttacaccagaagaagcagttgccatt
tatacgactacagtgcattggttggagtcaagaaagttttctcccattccattccctcca
ttgtcatataagcatgatacaaaactacttattctagctctggagaggttgaaagaatct
tacagtgtggctgtgagattaaaccagcttcagagggaagagttgggtctcattgaacaa
gcttatgataacccacatgaagcactgtcgcgaattaagcgtcacctgctcactcagcgt
gctttcaaggaggttggcatagagttcatggatttgtacagctatctcattcccgtttat
gagattgagcctcttgagaagattacggatgcatatcttgatcaatatttatggtatgaa
ggtgacaaacgccatctctttccaaactggatcaagcctgcagattcggagcctccccca
cttttggtctataaatggtgtcagggtataaacaatttacaaggtgtatgggacacgagt
gaagggcaatgtgttgtgatgcttcagacaaagtttgagaagttctttgagaagattgac
ttgacaatgttaaacaggctcttgaggttggttcttgaccacaacattgctgattatgtc
actgctaagaacaatgttgtgttgtcttacaaggatatgagtcacacaaactcatatggt
cttatacgtggtctccagtttgcttcttttgttgtacagtattatggacttgtgctggat
ctattgctacttggattgactcgagccagtgagattgctggtcctccccagatgcctaat
gagttcattacttattgggacacgaaagttgagacacggcaccctattcggctgtattcc
cgatacatagacagggtccatatattgttccgcttcacccatgaagaggctcgagacctt
attcagcgatatcttactgagcatcctgatcctaacaatgaaaatatggttggatataac
aataagaagtgctggcccagagatgcaagaatgaggctcatgaaacatgatgtaaatctt
gggaggagtgttttctgggatatgaagaatcgtcttcctcgaagtatcacaacattggag
tgggagaacagctttgtatcagtttacagcaaggataatccgaatttgctcttcagcatg
tgtggatttgaagttcggatacttcctaaaataagaatgacccaagaagcattcagcaat
acaagagatggcgtttggaatctgcagaatgaacagaccaaagaacggactgctgttgct
ttcttgcgggttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattcta
atgtcttctggatctaccacatttacaaaaattgtcaataaatggaatacagccctgata
ggtctcatgacttatttccgtgaagccactgtacatactcaagaactgttggatttgctg
gttaaatgtgaaaataaaatccagacccgtataaagattgggttgaactcaaagatgcct
agcaggttcccgcctgtcattttctacactccaaaggaaatcggaggactaggcatgctt
tccatgggtcacatattgattccacagagtgacctccgttacagtcagcagactgatgtt
ggtgtaactcactttaggagtggaatgagtcatgaagaggaccagctaattcccaatctt
tatcgatatatacaaccatgggagagtgagttcatagattcacagcgtgtgtgggccgaa
tatgcactaaagagacaggaagctcaggcacaaaataggcgtttgacccttgaagatttg
gaagattcatgggacaggggaattcctcggataaatactttgtttcagaaggatcgacat
actttggcatatgacaaaggatggagggtgcgcactgacttcaagcagtaccaagttcta
aaacagaaccctttctggtggacacaccagaggcatgacgggaaactttggaacttgaac
aactatcgaactgatgtcatccaagctttaggaggtgttgagggaattcttgagcatacc
ttattcaaaggaacatactttccaacatgggaaggactcttctgggaaaaggcatcaggc
tttgaggaatcaatgaagtataaaaagctgacaaatgctcagagatctggtctcaaccag
atccctaaccgtaggttcactctttggtggtcacctacaataaatagagcaaatgtttac
gtgggtttccaagtccagttggatctaactggcatcttcatgcacgggaagatccctacc
ttaaagatttcgctgattcagatattccgtgctcatttgtggcaaaagatacatgagagt
gttgtcatggatctgtgtcaagttttggatcaggagttagatgctttggaaattgaaact
gtgcagaaggaaacaatacatccgaggaagagttataaaatgaacagctcttgtgcagac
gttcttctctttgctgctcatagatggccaatgtcaaaacctagtcttgtggccgagcca
aaggatgtgtttgatcagaaagcaagcaacaagtactggatagatgtgcagctccgttgg
ggtgattatgactctcacgatattgagcgttacacccgggccaaatttatggattataca
acagacaacatgtctatatatccatctcctactggtgtgatgattggacttgatttggcc
tataacttgcattctgcatttggcaattggtttcctgggtcaaagcctctgctccagcag
gcgatgaataagatcatgaagtcaaatccagccttgtatgtgttgagggagcggatacgg
aaaggtttacagttgtattcttctgagcccactgagccgtatttgtcatcccagaattat
ggagagatcttcagcaaccaaataatatggtttgttgatgacactaatgtatatcgggtt
actatccacaagacatttgaaggaaatcttacaacgaaacccatcaatggggccatcttt
atattcaatccaaggaccggacagctgtttctgaaggtcatccacacaagtgtctgggca
gggcagaagcgtcttggtcagttagccaagtggaaaacagcagaagaagttgctgctctt
gtgcggtctttgccagttgaagaacaaccgaagcagattatagtgactcgtaaaggaatg
ctggacccattggaggttcacttgctggattttcccaacatagttattaaaggaagtgag
ctgcagcttcctttccaggcatgcttgaagattgaaaaatttggtgatctgattttgaag
gctacagagccacaaatggttcttttcaacatttatgatgattggttgaaaagtatttct
tcgtatactgcattctcccggctcattttgatactgcgtgcacttcatgtgaataatgag
aaggcaaagatgttactaaagcccgacaaaacaatcattaccgagcctcaccacatctgg
ccttctctcaatgatgatcaatggatgaaggtagaggttgctcttagagatctcatactc
tcagactatgccaagaagaacaatgtgaatacatcagccctgacacagtctgaaattcgt
gatatcatacttggagctgagattactccaccttctcaacagaggcagcagattgctgag
attgagaaacaggcaaaagaagcaagtcagctgacagcagtgacaacaaggaccaccaat
gtgcatggtgatgaactgattgtcaccaccacaagtccatatgagcaagctgcatttgga
tctaagacagattggcgtgtgagagcaatatcagcaacaaatctctatcttcgtgtcaat
catatttatgtgaattctgaggatataaaggaaacaggatatacctatattatgccaaag
aacattttgaagaagtttatctgcatagcagatcttcggactcaaattgctggctacttg
tatggtgtaagtccccctgacaacccacaggttaaggaaatccgctgtattgcaatgccg
ccacagtggggaacccatcaacaagttaaccttccagcagctctcccagagcatgatttc
ctgaatgacttagagcctttgggatggatgcacacacaacctaatgaacttccccagtta
tcaccacaggatctcacaagtcatgctaagatcttagaaaacaacaagcaatgggatggg
gagaagtgcattattttgacttgcagtttcactcctggttcctgctccttaactgcttat
aagctgacaccatcagggtatgagtggggacgtgtgaacaaggacactggaagcaatcct
catggctaccttcccactcattacgagaaggtccaaatgctccttagtgaccgcttccta
ggcttctatatgattcctgataatggtccatggaattacaacttcatgggggtgaaacat
gcacctagtatgaagtatggggtcaagcttggggcaccccgtgaatattatcacgaggac
cacaggcctacgcatttcctggagtttagcaacttggaggagggagagacgattgctgtg
ggagatcgtgaagacaccttctcatag
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integrated database retrieval system
