Carya illinoinensis (pecan): 122284360
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Entry
122284360 CDS
T08745
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122284360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122284360
Enzymes [BR:
cill01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
122284360
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
122284360
DNA repair and recombination proteins [BR:
cill03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
122284360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Motif
Other DBs
NCBI-GeneID:
122284360
NCBI-ProteinID:
XP_042951220
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All DBs
Position
1:complement(52466755..52474509)
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AA seq
407 aa
AA seq
DB search
MPELPEVEAARRAVEENCLGKKIKKAVIANDPKVVDGVTPSDFEAALLGKTVIAAHRKGK
NLWLQLDSPPFPSFQFGMAGAIYIKGVAVTTYKRSAVKDTDEWPSKYSKFFVELDDGLEL
SFTDKRRFAKVRFLPDPAAVPPISELGPDALLEPMTIDEFIDSLSKKKIAIKALLLDQSY
MAGIGNWIADEVLYQARIHPLQIAASLSKENCATLHKCINEVIQKAIQVGADSSQFPKNW
IFHSREKKSKASVDGKKIDFINAGGRTTAYVPELQKLIGNQAAKALGEPKKRTSKRKGGG
NGDDDIDEPADEKEIIGSEKLKKGPKPRGRGEKPTVKTKPKDNDDNESSDDDNADGGGAA
ANDSDDSGVQRKNMERATTNKRAKTEKTSKKKVATRPKSKKAEKKAK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctcccggaggtggaggcggcgaggcgggccgtagaggagaactgcctcggt
aagaagatcaagaaggcggtcatagctaacgaccccaaggtcgtcgatggagtcaccccc
tccgatttcgaggccgctctcctgggtaaaaccgtaattgctgctcaccgcaagggcaaa
aacctctggctccagctcgattcgcctccctttccttcattccaatttgggatggcgggt
gccatatatattaagggcgttgcagttacaacttataagaggtctgctgtaaaggacact
gatgaatggccttccaaatattcaaagttttttgtagaactagatgatggtttggagctg
tctttcaccgacaaaaggcgatttgctaaagtccgcttcctcccagatccagctgcagta
cctcccatatctgagcttggaccggatgctctattggagcctatgacaattgatgaattt
attgactccttgagcaagaagaaaattgcaattaaggctttactacttgaccagagttac
atggcaggtattggcaattggattgcagatgaagtgctataccaagcaagaatccatcca
ctgcaaattgctgccagcctgtccaaagaaaactgtgcaactttacacaagtgcataaat
gaggtcattcagaaagcaattcaagttggagcagatagtagtcagtttcctaaaaactgg
atatttcattcccgcgaaaagaaatctaaggcttctgttgatgggaagaaaattgatttt
atcaatgctggaggcaggacaacagcctatgtaccggagttgcaaaagctaattggaaac
caagctgcaaaagccttgggtgaaccaaaaaagcgaacttctaagagaaaaggtggtgga
aatggtgatgacgatattgatgaaccagcagatgaaaaagaaattattggaagtgagaaa
ctgaagaaaggacccaagcctagaggtcgaggtgaaaagcctacagtcaagacaaaacct
aaggacaatgatgacaacgagagtagtgatgatgataatgctgatggtggtggtgctgct
gccaatgatagtgacgattctggagttcaaaggaagaatatggaaagggcaaccactaat
aaacgagctaagacagagaagacatccaagaaaaaggtggcaacccgcccaaaaagtaag
aaggcagagaagaaagctaagtag
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