Carya illinoinensis (pecan): 122284958
Help
Entry
122284958 CDS
T08745
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122284958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122284958
03036 Chromosome and associated proteins [BR:
cill03036
]
122284958
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122284958
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122284958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
122284958
NCBI-ProteinID:
XP_042951262
LinkDB
All DBs
Position
1:52822840..52829021
Genome browser
AA seq
1070 aa
AA seq
DB search
MASPSLLPVSGISSELQSRRNVSFSSSCEVDSDVGTSSEVVSNYKKRRTSQNNDFSLCGI
LSEIEAILPTLRSAEYYMRPCLNELATWELEDPGYCSRVLDFTVGRVGYGSVKFLGKTDI
RWLDLDDILKFHRHEIVVYEDENAKPGVGQGLNKAAEVTLVLQVRSLGFEEGKLEMIVEK
LRIIAERQGACFISFDPANGEWKFLVQHFSRFGLNEDDEEDIVMDDATVIQNPMGMNGGE
APDIDEETGMGATSVVLSHSLPAHLGLDPVRMREMQMLMFTDEEEEAEDTSEIPAYQKPS
FGKDSVRSPFRNSAQMMSHRSTPPVARKAPLPLLEYDHGNFDSNSPGAILMAQQNKGLSL
RPLKPEGSGFKLDLKKKTPVTGSHSRNIVDAGLFMGRSFRVGWGPNGILVHTGTPVGSND
SHRVLSSVITLAKVATDEVVRDENNKVREELVDLAFDSPLNLHKEINQETKEVEVGSFKL
RLRKLVSDRLMLSEICRSYGDIIERRLEVPGLSSSSRVVLSHQVMVWELIKVLFSDRENS
SQLKSLVADNEEDMMQDMKEASSDVDIEALPLIRRAEFSLWLQESVCPRVQDTISSLNES
SYLEHVFLLLTGRQLDAAVELAASTGDVRLACLLSQAGGSMVNRADVAQQLDLWRINRLD
FSFIEEDRLRLYELLAGNIHGSLHGMKVDWKRFLGLLMWYQLPPDTSLPIVFHTYQDLVD
DGKAPYPVPVYIDEGPVEKAVNWSTEERFDFSYYLMLLHASGEGEFDLLKAMFTALSSTN
DPLDYHMIWHQRAVLEAIGAITSNDLHVLDMGLVSQLLCLGKCHWAIYVILHMPYREDFP
YLHASLIREILFQYCECWSSDESQRQFIENLGVPVVWLHEAMAIYCGYYGDFSKALENFL
QCAHWQKAHTILITTVAHKLFLSAKHSEIWRLATCMEDHKSEIENWDLGAGIYISFYLLR
SSLQEDNNAMSELDSIESKNAACRDFLGRLNESLAVFGGRLQVDARVAYSKMAEEICGLL
LSDIGEGSTYDSQLSCFDTVFRAPIPEDLRSSYLQGAVSVFTCFLSEVPS
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccccttctctgctcccggtttccgggatttccagtgaacttcagagtagaaga
aacgtgtcatttagtagttcttgcgaagtggactctgatgtaggaactagctcagaagtt
gtatctaattacaagaaaagaaggacatctcaaaacaatgatttttctttgtgcgggatt
ttgagtgagattgaagctatcttacctactttaaggtcagctgagtattacatgagaccc
tgtttgaacgaattggctacctgggaacttgaggaccctggttattgtagccgagttttg
gacttcacagttgggagggtgggttatggatcggtcaagtttcttgggaagactgacatt
agatggttggatctagatgacattttgaagttccataggcatgagatagttgtttatgaa
gatgaaaatgctaagcctggagttggacagggacttaacaaggctgctgaagtgactttg
gtgctacaagtgagatctctgggttttgaagagggaaaactagagatgatcgtggaaaaa
ttaagaatcattgcagaaagacagggggcttgcttcatttcgtttgacccagcaaatggt
gaatggaaattcttggttcaacatttcagcagatttggtttgaatgaagatgatgaggaa
gatattgtaatggatgatgcaactgtaattcagaatcccatgggtatgaatggtggtgag
gctcctgatattgatgaagaaacaggcatgggagccactagtgttgtgctctctcactct
cttcctgcccatcttgggcttgaccctgtaagaatgagagagatgcaaatgttaatgttt
actgatgaggaagaggaggcagaggataccagtgaaataccagcataccagaagccatca
tttggtaaagatagtgtaagatctcccttccgcaactctgctcaaatgatgagccataga
tctactccacctgttgctcgaaaagccccattaccgttgctcgagtacgaccatggtaat
tttgattcaaactctcctggagccattctaatggcccaacaaaataagggtctgtctctg
aggcctttaaaacctgaaggttcaggttttaagctggacctcaagaaaaaaacaccagta
actggaagccattctcgcaacatagtggatgcaggcttgttcatgggtaggtcatttcgg
gttgggtggggcccaaatgggattcttgttcacacagggacaccagtaggcagtaacgat
tctcatagggtgttatcatctgtcatcactttagcaaaggttgctacagatgaagtggtt
agagatgaaaataacaaggtcagagaagaacttgttgaccttgcatttgattctccatta
aatctccacaaggagataaatcaggaaacaaaagaagttgaagttggttccttcaagctg
agacttcggaaacttgtctcagatcgcttaatgctttcagagatttgtaggagttatgga
gatattattgagaggaggttggaagttcctgggctatcttcctctagtcgtgtggttttg
tctcatcaagtaatggtgtgggaattgataaaagttcttttttctgatcgggaaaatagt
tcacagttgaagtccttggttgctgacaatgaggaagacatgatgcaggatatgaaagaa
gcttcttcagatgtagacatagaagcacttcctcttattcgaagggcagagttcagctta
tggttgcaagagagtgtctgtcctcgggtacaagatacaataagctccttgaacgaatca
agttatctggaacatgtattcttactcttgacggggcgacagcttgatgcagctgtggag
ctcgctgcttctacaggggatgtgagactggcttgcttattaagccaggctggtgggtcg
atggtgaatcgtgctgatgttgcacagcaacttgatctttggagaatcaataggctggat
ttcagtttcattgaggaggaccggttaaggctttatgaattgcttgctggtaatattcat
ggttctttgcatggtatgaaagttgattggaagcgatttctaggtttattgatgtggtat
caactaccacctgacacttccttacccattgttttccacacttatcaagatcttgttgat
gatggaaaagctccatatcctgttcctgtatacattgatgaaggaccagtagaaaaggct
gttaactggagtacagaggaacgttttgacttctcgtattatcttatgcttcttcatgcg
agtggcgagggagagtttgaccttttgaaggcaatgttcactgcattatcttcaacaaac
gatccacttgattaccatatgatttggcatcagcgtgcagtgttggaggcaattggtgct
atcacttctaatgatcttcatgttcttgacatgggacttgtctcgcagctgttatgtctc
gggaaatgtcattgggctatctatgtgatccttcatatgccctaccgtgaagattttcca
tatctacatgcaagtctcattcgagaaatcttgttccagtactgtgaatgttggagttca
gatgagtcgcaacgccaatttattgaaaacttaggggttccagtcgtgtggcttcacgag
gctatggctatttactgtggttactatggagatttctcaaaggcacttgagaactttctt
caatgtgcacattggcaaaaagctcataccattttgataacgacagttgctcataaattg
ttcttgtcagccaaacactcggagatatggaggcttgctacttgtatggaggaccataag
tcagaaattgagaattgggacttgggagctggaatttatatttcattttatctattgaga
agttcactgcaagaagataacaatgctatgagtgaactggattctattgagagcaaaaat
gctgcttgtagagactttctgggtcggttaaatgagtctctagcagtttttggtggtaga
ttacaagttgatgcaagggtagcttattcaaaaatggcagaggagatatgtggcttgctt
ctttctgacattggtgaaggctcaacatacgatagtcagttaagctgctttgacactgtt
tttagagctccgatccctgaagaccttcgctcaagttatttgcagggtgcagtgtctgtt
tttacatgctttctttcggaggtgccctcatag
DBGET
integrated database retrieval system
