Carya illinoinensis (pecan): 122286917
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Entry
122286917 CDS
T08745
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122286917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122286917
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
122286917
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
122286917
NCBI-ProteinID:
XP_042951383
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Position
1:53693675..53701214
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AA seq
689 aa
AA seq
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MARNRETLLLLLDVGPSMHKVLPELEKVCSMLVEKKLVYHKSDQVGIILFGTEDTKNELT
REVGGYEHVVVLQDTKVVDGDLVEALQQLPRGTFNGDFLDAIIVGMDILIKKFGETDKKK
KRLCLITNALSPVKDPFEGTKEGQVITIAEQLVRHGMGMESIVVRERLNGSATKRIMDEN
DHLLNIFAKKTSAKLVYVESPTSLLGALRTRNISPVTIFRGDLELSSKMKIKVWVYKKTS
EEKFPTLKKYSDKAPPTDKFATHEVKVDYEYKSVEDPGRVVPPEERIKGYRYGPQVVPIA
PSEWDAVKFKPEKGIKLLGFTNASNILRHYYMKDANVFIADPGNTRAILAVSALARAMKA
ENKVAIVRCVWRHGQGNVIVGVLTPNVSDKDNIPDSFNFNVLPFVEDVREFQFPSFNNFP
ASWQPNEQQQEAADDLVKLLDLAPSGKEEVLQPEFTPNPVLQRFYHHLDLKSKHPDAAIP
PLDETLKRITEPDPELFSLNKSAIDAFRRSFELKDNPKLKKSTRRILREKTSGSNMGEGY
ADISVQSLNSIENTSAVKIEKIGDLTPVQDFETLMSRRDGPEWIGKAIKDMKNKIFDLVE
DSYEGDNYPKALECLVALRKGCILEQEPKQFNDFLRHLCKFCREKNLNSFCEFLTSKELA
LISKTEAIDSEVCDDEARSFLVKPDTKVE
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacagggagaccttgctattgttgctcgatgtgggcccgtcaatgcacaag
gttcttccggaacttgaaaaggtctgctctatgctagtagagaaaaagctggtataccat
aaatctgatcaagtgggtatcattttgtttggaacggaagacacaaaaaatgagttgaca
agggaagtggggggatatgagcatgtggtggttttacaagataccaaggttgttgatgga
gatcttgttgaagctttacaacagctccctcgaggaactttcaatggtgattttcttgat
gctataattgttgggatggatatactgataaagaagtttggagaaacagacaaaaaaaag
aaacgcctttgcctcataacaaatgcattgtctcctgttaaagatccatttgaaggaaca
aaagaaggtcaagtcatcaccattgctgagcaattggttagacatggcatgggaatggaa
agtatagttgtgagagagaggcttaatgggagtgcaaccaagagaataatggatgaaaat
gatcatctattgaatatatttgcaaagaagacatctgcaaagttggtgtatgttgaaagt
ccaacatcattgcttggtgcacttagaactcgaaatatatctccagttacaatattcaga
ggtgatcttgaactaagttccaaaatgaagattaaggtgtgggtttacaagaaaacttct
gaagagaaatttcctactctgaagaaatattctgacaaagcacctccaactgacaaattt
gctacccatgaagtcaaggtagattatgagtacaaaagtgttgaagatcctggcagagtt
gtacctccagaggaaaggatcaaaggatatcgttatggacctcaagtggttcctatagct
ccttctgaatgggatgctgttaagttcaaaccagagaagggcataaaacttctaggattt
actaatgcttctaacatattgcgacactattacatgaaagatgccaatgttttcattgct
gatccgggaaatacaagggcaattcttgcggtttctgccctagcaagggcaatgaaggcg
gaaaacaaggtggcaattgtacgctgtgtttggagacatgggcaggggaatgtcatcgta
ggagttctgacacccaatgtatctgacaaggacaatattcctgattcgtttaacttcaat
gtgcttccctttgttgaggatgttcgggaatttcaatttccctctttcaacaatttccca
gcatcatggcagcctaatgaacagcagcaggaggctgcagatgacttggtgaagttgctt
gatctggcaccatctggcaaagaggaagttctgcagcccgaatttacaccaaatcctgtt
cttcagcgattttatcatcatcttgatttgaaatcgaagcacccagatgcggccatacct
ccacttgatgaaaccctcaagaggataacggaacctgatccagaactattttctctaaac
aagtctgctattgatgcgtttcgaaggagttttgaactcaaagataatccaaagctgaag
aaatcaactcggagaattttgcgagaaaaaacttctggatcaaacatgggagagggttat
gcagacatttctgttcaatctctcaattccattgaaaatacgtctgcagttaagattgag
aaaattggggatttgacccctgttcaagactttgaaaccttgatgtcacgcagagatggt
ccagaatggattggtaaagcaatcaaggatatgaaaaacaaaatatttgacttggtggag
gattcctatgaaggggacaattatcctaaagcactggaatgcctagttgcccttcggaag
ggttgcatccttgagcaggaaccaaaacaatttaatgatttcctgcgccatctttgtaaa
ttctgccgggagaagaacctcaatagtttttgtgaatttcttacatccaaagaactcgcc
ctaatctccaagacagaagccatagacagtgaagtttgtgatgatgaagccaggagtttt
ctagtcaaaccagacacaaaagttgagtga
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