Carya illinoinensis (pecan): 122289094
Help
Entry
122289094 CDS
T08745
Name
(RefSeq) SWI/SNF complex component SNF12 homolog isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122289094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122289094
03036 Chromosome and associated proteins [BR:
cill03036
]
122289094
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122289094
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122289094
PBAF complex
122289094
GBAF(ncBAF) complex
122289094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
122289094
NCBI-ProteinID:
XP_042951960
LinkDB
All DBs
Position
12:20812182..20828051
Genome browser
AA seq
549 aa
AA seq
DB search
MNHNNTKKNVGAPIPFGNSGTVPQSMPMNQNHQTHLLSQSQPQTQSGSHFPGHFQLSEPQ
TQALALAQAQAHAQAQAQAVHVQFQAQLQAPAQPVPQLHPGNTSNVGVPSPSVSTPGTGS
AKRSSQKPPSRPPGSSNANTGSPYKTMELTPAVRRKKQKLPEKQIPDKVAALLPESALYT
QMLELEARVDAALARKKIDIQESLKNPSRVQKTLRIYVFNTFTYQSQAQASPENKDAEPP
SWSLKIIGRILEDGKDPVVAGVVQKPSASYPKFSSFFKKITIYLDQSLYPGNHVILWESA
RSPVLNEGFEVKKKGDKEFTAIIRLEMNYVPEKFKLSPALSEVLGIEVETRPRIVAAIWH
YVKARKLQNPNDPSFFFCDPPLQKVFGEEKIKFGMVTQKISQHLTPPPPIHLEHKIKLSG
NCPAGTTCYDVLVDVPFQLEKEMNAFLENTERHKEIDACDELICASIKKIHESRRRRAFF
LGFSLSPAEFINALIASQSKDLKLAAGDASRNAEKERHSDFYNQPWVEDAVIRYLNRKSA
GTDAPGILK
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgaatcataataacactaagaagaatgttggggcgccaatcccttttggtaattctggg
acggttccacagtctatgcccatgaaccagaaccaccaaacccatcttctatctcagtca
caacctcaaacacaaagtgggtctcacttcccaggccacttccagctgtctgagcctcaa
actcaggcgcttgcgctggctcaggctcaggctcatgctcaggcacaagctcaggctgtc
catgtccaattccaagctcagttacaagctccagctcagccagttccccagttgcatcct
ggaaatactagtaatgtaggtgtcccgtcaccttctgtttcgacgcctggtactgggagt
gccaagaggagttctcaaaagccaccttctcggcctcctggttcatccaatgccaacaca
ggttcaccgtacaagaccatggagctgacccctgctgttcgtagaaagaaacagaagcta
cccgagaagcaaataccagacaaagtagctgctcttctaccagagtctgctctttacact
caaatgcttgaactggaggctcgggttgatgctgctttggcaagaaagaagattgacatt
caggagtcacttaaaaacccttcccgtgttcagaaaacactcaggatttatgtttttaac
accttcacatatcagtcacaagcacaagcaagtcctgagaacaaggatgcagagcctcct
tcttggtcacttaagatcatagggaggatattggaagatggaaaggatcctgtggtggct
ggagtggtgcagaaaccaagcgcttcatacccaaagttctcatcctttttcaagaaaatt
accatatacttggatcagagcctctatccaggtaaccatgtaattttatgggagagtgcc
cgttcgcctgttcttaatgagggatttgaggtgaagaaaaaaggggataaggaatttacc
gcgataataagactggaaatgaactatgtgcctgagaagtttaaactttcccctgctctg
agtgaagttcttggaattgaggtagagacccgcccaagaattgttgctgcaatttggcac
tatgtgaaggctaggaagttacagaatcctaatgatccttccttctttttttgtgatcca
cctcttcagaaagtgtttggggaagagaagattaaatttggcatggttacacaaaagata
tcacagcatttgacgcccccaccacccatacatttggagcataaaatcaagctttcggga
aattgtcctgctggaactacttgctatgatgtactggttgatgtgccttttcaattagag
aaggaaatgaatgctttcttggaaaataccgaacggcacaaagagattgatgcttgtgat
gaattgatttgtgcttccataaagaagatccacgagagtcgtcggaggcgggctttcttt
cttggatttagtctttctccggctgaatttattaacgctttaattgcttctcagagcaaa
gatttaaagcttgctgctggagatgctagccgtaatgccgaaaaagaacgccattcagat
ttctataatcaaccatgggttgaagatgccgtcattcgttacctgaaccgcaagtctgct
ggaactgatgctcccggaatacttaagtga
DBGET
integrated database retrieval system
