Carya illinoinensis (pecan): 122289322
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Entry
122289322 CDS
T08745
Name
(RefSeq) mRNA-decapping enzyme subunit 2-like isoform X1
KO
K12613
mRNA-decapping enzyme subunit 2 [EC:
3.6.1.62
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122289322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122289322
Enzymes [BR:
cill01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.62 5'-(N7-methylguanosine 5'-triphospho)-[mRNA] hydrolase
122289322
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122289322
mRNA degradation factors
5'-3' decay
Decapping complex
122289322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP2
NUDIX
NUDIX_4
Motif
Other DBs
NCBI-GeneID:
122289322
NCBI-ProteinID:
XP_042952241
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All DBs
Position
1:54679548..54684885
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AA seq
340 aa
AA seq
DB search
MSGVHRSSSASLKSGLPPQELLDDLCSRFVLNVPKEDLESFERILFLVEYAHWFYEDNSV
EKNPSLKSFTLKEFTSLLFNSCDVLKPYVAHLDDIFKDFTSYKVRVPVTGAIILDETYER
CLLVKGWKGSSWSFPRGKKNKDEEDHACAIREVLEETGFDASKLLNKDEYIELIFGQQRV
RLYIIAGVKDDTAFAPLTKKEISNVALQWWGNLHFLVICLQEIAWQRLDELQPANDDVIS
RGISGLKLYMVAPFLISLKLWVSAHQPPLTPKLDMPLKGICVWKARNSWTGSSCTMILES
QSTKAEADVYKPETVPGKSLRNFRFDIGPILQAMEVAFSA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgtccaccggtcctctagtgcttccctgaagagcggccttcctccccaggaa
ctcctcgacgatctctgcagtcggtttgttttaaatgtgccaaaagaagacctcgagtca
tttgaaaggattttatttcttgtggagtatgcacattggttctatgaagacaattctgtg
gagaaaaatccatcactaaagtcattcactcttaaggagttcacttctttactattcaac
agttgtgatgtcttgaaaccttatgttgcccatctggacgacatatttaaggacttcact
tcctacaaggtccgagttcctgtaactggggcaatcattttggatgagacttatgaacgg
tgtctactagtgaaaggttggaaagggtcaagctggagttttccacgcggcaaaaagaac
aaagacgaggaagaccatgcatgtgccatcagagaagtcctggaggaaacaggttttgat
gcttctaagcttcttaacaaagatgaatacattgaactgatatttggacaacagagggtg
cgtctctacataattgcaggtgtgaaggacgatactgcctttgctccacttaccaaaaaa
gagatcagcaatgttgcattgcaatggtggggaaatttgcattttcttgttatctgcttg
caggaaattgcatggcaacggcttgatgaacttcagcctgcaaatgatgatgtgatatct
cgtgggatcagtggcctcaagctttacatggtggctcctttcttgatatctttgaaatta
tgggtttcagcacatcagccccccttgactccaaaacttgatatgccactcaaaggaatt
tgtgtgtggaaagcaaggaacagttggacagggagtagctgcacgatgatattggagagc
caatcaacgaaagctgaggctgatgtttacaaacctgaaacagtccctggcaagagcttg
agaaatttcagatttgatattggaccaatcttgcaagctatggaagttgccttctctgct
tga
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