Carya illinoinensis (pecan): 122289583
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Entry
122289583 CDS
T08745
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122289583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122289583
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122289583
mRNA degradation factors
5'-3' decay
Decapping complex
122289583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
122289583
NCBI-ProteinID:
XP_042952655
LinkDB
All DBs
Position
12:30737632..30745628
Genome browser
AA seq
1406 aa
AA seq
DB search
MASPGNPNHQQLQHPQQQLDMQSFFKPTNPSPPQLPLPNPGGVSTPNPPNLNPSAPLPPS
SGPYSYPLQSAPFHNPNPFHHHQPYPYHPHLQHQRSLSYPTPPLQPPISSSSSSPNPNPN
SGARLMALLNPNLDLPPHQAPLAPPNPPSSSSSSSSAMMSLIPPSVGPRPIRLPSSKLPK
GRHLVSEHAVYDVDVRLQGEVHPQLEVTPITKYQSDPQLVFGRQIAVNKSYICYGLRQGN
IRVLNINTALRSLLRGHTQRVTDMTFFAEDVHLLASVGIDGRVYVWKISEGPDEEDKPQI
TGNAIVAIQIIGEEGASHPRVCWHCHKQEILVVGIGRRILRIDTTKVGKGEVYLAEEPLK
CPVDKVIDGVQLVGNHDGEVTDLSMCQWMTTRLVSASIDGTVKIWEDRKHVPLAVFRPHE
GQSVCSATFLTAPHRPDHIILITAGSLNREVKLWASTSEEGWLLPSDAESWKCTQTLELK
STDEPRVEEAFFNQVAALSQAGLLLLANAKKNAIYAVHLEYGPNPAATRMDYIAEFTVTM
PILSFTGTSDILPHGEHIIQVYCVQTQAIQQYALDLAQCLPPPLEIMGLEKPDSNVLRDA
TSAEGFTASDPSGNKPNEALPLAGSAPKQNIQGSSSECATSVRYTVSSSSAEAATSKEIN
SFSMESKPLSLTPVMSDGDGVASLPIPLTPRLSRELSGFRSPTSNFEQGPPLSIHVGDQP
VNDYLVERQVDTIRANSSDVSSLDDDSRNDKAKITSNAQDDLSTVLNPHIMFKQPTHLVT
PSELKVNSSSGTTSILEIKSEGETSIQDVIVNSDVGNTEVEVKVVGETRSTQSDGFGPRR
DSQNLLVENKEKFFCSQASDLGIEMTRECCAISSETYIVEEARQVDCVGVMEQLGQPPNA
DEEEVHDSTKKLPGKVSESSTSAQVLLSSTPNLKGKKQKGKSSQALGPSSPPPSVFNSTD
SLNEPSGSTSLPSGEAAFSQILAMQEMLNQLMTMQKEMQKQMATMISVPVSKEGKKLETN
LGRSMEKVVKANTDALWARFQEENAKNEKLLRDRTQQITSLINNFMNKDLPMMLEKAVKK
EMTAVGPAVVRSITPAIEKSISSAIAESFQRGVADKTVNHLEKSVNSKLEATVARQIQVQ
FQTAGKQALQDALKYSLETSVIPAFEMSCKAMFEQVDATFQKGMVEHTTAAQHHFESSHS
PLALALRDAINSASSVAQTLGGELLEGQRKLLSLAASGADSSAVNPLVSQLSNGPLGGLH
DKVEVPVDPTKELSRLVSDRKYEEAFTTALQRSDVSIVSWLCSQVDLRGILSMVPLPLGQ
GVLLSLLQQLACDISNDTPRKLAWMTDVANAIIPADPMIAVHVRPIFDQVYKILNHQRSL
PTITGAELSSIRLLLHVINSMLMTCK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggtaatcccaaccaccaacagctgcaacatccccagcagcaattggac
atgcagagtttctttaaacccacaaatccctcgcctccacaattaccgctacccaatccc
ggcggtgtttctaccccaaaccctccaaatctaaacccttccgctccccttccgccatcc
tccggcccctactcctatcctctccaatccgcaccgtttcacaaccccaaccctttccac
caccatcaaccctatccttaccatccccacttgcagcaccaacgctccctctcttacccc
acccctcctctccaaccccccatctcttcctcctcatcttctcctaaccccaatcctaac
tctggagcccgccttatggccctcctcaaccccaatcttgacctccctcctcatcaggcc
ccgctagctcctcctaaccctccctcctcctcctcttcttcttcttctgcgatgatgagt
ttgatacccccatccgtcggaccccgcccgattcggttgcccagcagtaagcttcccaag
ggccggcatttggtctccgaacacgcggtctacgacgtggatgttcggttgcaaggcgag
gtacatccacaactggaggtcactcccattaccaagtaccaatccgatccccagctcgtc
ttcggccgccagattgcggtcaacaagtcttatatctgctacggattgaggcagggcaat
atccgtgtccttaatatcaacactgccttgcgttctttgcttcgaggccacactcagagg
gtcacagatatgactttctttgctgaggatgttcaccttttggctagtgttgggatagat
ggacgggtttatgtatggaagatttctgaaggtccagatgaagaagataagcctcaaatt
acaggaaatgctattgttgcgattcaaattataggagaggagggagcttctcatccacga
gtttgttggcactgccacaaacaagaaattttggttgttgggattggaagacgtattctt
agaattgataccacaaaagtcggaaagggtgaagtgtatttggctgaggaacctctcaaa
tgtcctgttgataaggtcattgatggggttcagttggttggtaaccatgatggagaagta
actgatttgtcaatgtgccagtggatgaccacccgtttggtttcagcttctatcgatggc
acggtaaagatctgggaagatcgcaaacatgttccacttgctgtattcagaccacatgag
gggcagtctgtttgttcggcgacctttttaactgctccccatcggccggatcacatcata
cttatcactgcggggtcactgaatcgagaagtgaaactgtgggcctcgacaagcgaagaa
ggctggctactgccgagtgatgcagaatcatggaagtgtactcagacattggagttgaag
agtacagatgaacctcgagttgaagaggccttcttcaatcaagtcgcagcattgtctcaa
gcaggccttctcttacttgcaaatgccaagaagaatgctatatatgctgtacacttagaa
tatggtcctaatccagcagcaacccgcatggattacatagcggagtttacagtcaccatg
cctattttgagttttacgggaacaagtgatatattacctcacggtgaacatattattcag
gtttattgtgtccagacacaggcgattcagcaatatgctttggacttggcccagtgctta
cccccaccgttggagatcatggggttagaaaagccggattcaaatgtcctgcgtgatgca
actagtgctgaaggatttactgcttcagacccatctggaaataaaccaaatgaggcactg
cccttagctggctcggcacccaaacaaaatatacaaggaagtagctctgagtgtgcgact
tcagtgagatatactgtaagctctagttctgccgaggcagccacttcgaaagaaattaac
agtttcagtatggaatctaagcctttatcactgacacctgtaatgagtgatggtgatggt
gtcgcatcactgcctattcctttgactccaaggttgtctagagagctttctggttttcgg
agtccaacaagtaactttgaacaaggtcccccactcagtatccatgtcggagaccaacca
gttaatgattatttggttgagaggcaagtggacaccattcgtgcaaactcgtctgatgtg
tcttcattggacgatgattctaggaatgataaggcaaaaattacatcaaatgcgcaggat
gatttgtcaactgtgcttaatcctcatatcatgttcaaacaaccaactcatctggttact
ccctctgagttgaaagtcaattcatcctctggaacaactagcattcttgaaatcaagagc
gagggagagacaagcatccaggatgtgattgtgaacagtgatgtgggtaatactgaggtt
gaggtgaaagtagttggtgaaacaagatccacacagagtgatggatttggccctcgaaga
gattctcaaaatcttttggtagagaataaggaaaagttcttttgctcacaggcttcagat
cttggtattgagatgacccgagaatgctgtgctatatcatctgaaacctacattgtggag
gaagctcggcaagttgattgcgttggtgtaatggagcaactgggccaacctccaaatgct
gatgaggaagaagtacatgactccacaaaaaaattgcctgggaaggtttctgagtcatct
acatctgcacaagttctgctttcatcgacaccaaatttaaaagggaaaaaacagaagggt
aaaagttctcaagctttgggtccatcttccccgcctccaagtgtttttaattcaacagat
tctttgaatgaacctagtgggagtacgagtctcccctccggtgaagctgctttttctcaa
attttggccatgcaggagatgcttaatcagctcatgacaatgcaaaaagaaatgcagaag
cagatggcaacaatgatttctgttccagttagcaaagaaggtaaaaaactagagacaaat
cttgggcgtagtatggagaaggttgtcaaagccaatacagatgctttgtgggctcgtttt
caagaagagaatgcaaagaatgagaagttattgcgagaccgtacacagcaaataacaagt
ttgattaataacttcatgaataaagacttgccgatgatgttagaaaaagcagtgaagaag
gaaatgacggctgtaggaccagctgtagttcgctcaattactccggccattgagaagtca
atatcttcagctattgcagagtcttttcagagaggagtcgctgataagacagtgaatcat
ctggagaaatctgtcaattcaaaacttgaagctactgttgctaggcaaatccaagtacag
tttcaaactgctggcaaacaagctcttcaggatgctttaaaatacagtttggaaacatca
gtaattcctgcctttgagatgtcatgtaaagctatgtttgagcaagtagatgctaccttt
cagaaaggcatggttgaacatacaactgcagctcagcatcactttgagtcttcccattct
ccattggcacttgctttaagggatgccattaattcagcatcatctgtggctcaaacctta
ggtggagaattgcttgagggtcagagaaagctattatctcttgcagcttcaggagcagac
tcaagtgcagtaaatcccttggtctcccaattgagcaatggacctttgggtggtctccat
gataaggttgaggttccggttgatccaacaaaggagctttcaagattggtatctgaccgc
aaatatgaggaggctttcactacagccctacaaagaagtgatgtttccatagtatcctgg
ttatgttctcaggttgatcttagggggattttgtcaatggttccgcttcctttgggccag
ggagtgctgctctctcttttgcagcaattggcatgtgatataagtaatgatacaccacga
aaacttgcttggatgacagacgtggctaacgccataatcccagcggatccaatgattgcc
gtgcatgtgcggcccatcttcgatcaagtctacaagatactaaaccaccaacgtagtttg
cctacgattactggagctgagctctcaagtatccgcctcctcttgcatgtcatcaactcc
atgctgatgacctgtaaatga
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integrated database retrieval system
