Carya illinoinensis (pecan): 122289751
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Entry
122289751 CDS
T08745
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122289751
03015 mRNA surveillance pathway
122289751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122289751
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122289751
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_ACIN1
RRM_occluded
Nup35_RRM_2
YHR127W_C
RRM_3
Motif
Other DBs
NCBI-GeneID:
122289751
NCBI-ProteinID:
XP_042952940
LinkDB
All DBs
Position
12
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AA seq
415 aa
AA seq
DB search
MAKPSRGRRSPPSGSVSGSSSRSRSYTGSDSRSSSRSRSLSRSRSRSRTFSSSSSPSRSI
SSRSASPPPSKKSPMEVARRGRSPPPNSKRTSPPPRKASPMQESLVLHIDKLSRNVNEGH
LKEIFSNYGEVVNVELAMDRVVNLPKGYGYVEFKTRVDAEKAQLYMDGAQIDGNVVQARF
TLPPRQKVSPPLKATANAPRRDAPKTDGVTADVEKDGLKRQREPSPRRKPPASPRRRSPI
ARRGGSPRRQPDSPPRRRADSPIRRRVESPYRRGDTPPRRRPTSPGRGRSPSPLRRNRSP
ARRMRGSPVRRRSPLPPRRRTPPRRARSPPRRSPIGHRRSRSPIRRPARSRSRSVSPRSR
GRAPVTRRGRSSSYSKSPSPCKVARRLSRSPRRPLRGRSSSNSSRSSSPLPPRKP
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagccgaggccgtcggtcgccgccatctgggtccgtttcgggctcctcc
tctcggtcaaggtcctacaccggctccgactcccgttccagctctcggtcccggtccctc
tcacgttccagatctcgatcgaggacgttctcctcatcttcttctccgtctcgtagtatc
agttctcgcagcgcaagccccccgccttcgaagaagagtcctatggaagtagctaggcga
ggtcgttctccaccaccaaattctaagagaacttctccaccaccgaggaaagcttctcct
atgcaagaatcgcttgtccttcacatagacaaactcagccggaatgtgaatgaaggccat
ttgaaagaaatattcagtaactatggtgaagttgtaaatgtggagctggcaatggatcgc
gttgtcaaccttcctaagggctatggatacgtggagtttaagacaagagtggatgctgaa
aaggcacaattatacatggatggtgcccaaattgatgggaatgtcgttcaagcaaggttc
actttacctcctcgacagaaggtgtcaccacccctaaaagcgactgccaatgctccaagg
agagatgctcccaaaactgatggtgtcactgctgatgttgagaaggatggactcaagcgg
cagagagaaccttctccccgtcggaagcctcctgcctcaccccgaaggagatctcctatt
gctcgaaggggaggatcccctagacgtcagccagattctcctccacgccgtcgtgcagat
tctcccatccgtcgtcgagtggaatctccttatcgccgcggtgatacacctccaaggaga
aggcccacatctcctggcagaggtcgttccccatctccattaaggcgcaacagatcccct
gcaagaaggatgcgtggcagtcctgttcgcagacgttctccacttcctccaaggcgccgt
acgcctccaagacgagctcgtagtcctcctagaaggtctccaattggtcatagacgtagt
cgctctcccattcgcagacctgctcgctcacgttcgcgatcagtctctccacggagcaga
ggacgggcaccagtcacaagacgtgggaggtcatcatcctactctaagtcacctagtcca
tgcaaggtcgccaggagattgagtcgtagtccaagaaggcctttgagaggaaggagcagt
agcaacagcagccgcagtagttcgccactgccacctcgtaagccatag
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