Carya illinoinensis (pecan): 122289800
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Entry
122289800 CDS
T08745
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122289800
03015 mRNA surveillance pathway
122289800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122289800
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122289800
mRNA cycle factors
P-body specific factors
122289800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
122289800
NCBI-ProteinID:
XP_042953025
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All DBs
Position
1:complement(55111131..55124629)
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AA seq
1214 aa
AA seq
DB search
MELFKEEILMNIVIDTNKKMDHHEDECRAGAENHSKQDDEEAVAHLEEIKKSVEAKMALR
QSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREGLMEELRSVNLSKFVSEAVT
AICDAKLRTSDIQAAVQICSLLHQRYKDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAMK
KRSTLKLLSELYFVGVIEDSGIFMNIIKDLTSLEHLKDRDTTQTNLTLLASFARQGRIFL
GLPLSGQEIHEEFFKGLNVTADQKKFFRKAFHTYYDAAAELLQSEHGSLHQMEHENAKIL
SARGELNDENASSYEKLRKSYDHLYRNVSSLAEALDMQPPAMPEDGHTTRVTTGEGASPP
ASGKDSSILEAIWDDEDTRAFYECLPDLRAFVPAVLLGEADPKANEISMKMQEQHTEPAP
ESDQDQQAAQDAAEVSSDSGALQEGKGIDKGKDKEEKDKEKIKDSDKEKGKEKDADKKGE
NEKEKSKGQEGTNLEALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRGLFNVPRTS
LELLPYYSRMVATLSTCMKDVSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCK
FKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLK
NVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKTTIEHVLRQL
RKLPWSDCEPYLLKCFMKVYKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRVGL
ELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTPEQDSLDPPEDCFR
IRMVTTLLETCGHYFDRGSSKRKLDRFLVHFQRYILSKGALPLDIEFDLQDLFAELRPNM
TRYSSIEEANAAVIELEEHEHSVSADKANNEKYSDSENSSRRTTSNANSVNGKSIGNGTE
ENGRVHEDIGNSDSDSGSGSIDPEGHEEEELDEEHPDDGSDSEDEDDDDGVGPASDEDEV
HVRQKVTEVDPQEEANFMQELKAVVQESMEQRRQELRGRPALNMMIPMNVFEGSTKDHHG
RGGVVGESGEEALDEETGGSKEVQVKVLVKRGNKQQTKQMYIPRDSSLVQSTKQKEAAEL
EEKQDIKRLVLEYNDREEEELNGLGTQTMNWSHGAGNRGSSRGNTWDGTGTRASGSRHRH
HNYSGSGLYYSRKK
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggaactgtttaaagaggagatcttgatgaatatagtcatcgatacaaacaagaagatg
gatcaccatgaggatgaatgccgtgctggagctgaaaatcacagcaagcaagatgatgag
gaagctgttgcccatcttgaggaaattaagaaatcagtggaggcaaaaatggctcttcgt
caaagcaatttgaatcctgaaaggcctgattcaggatttcttaggacattggactccagc
attaaacgtaatacagcagttataaaaaagctaaagcagataaatgaagagcagcgtgaa
ggtctgatggaagagttgcggagtgtcaacctaagcaaatttgtcagcgaagctgttaca
gctatttgtgatgccaaacttagaacatcagatatacaagcagcggtgcagatctgctct
ttgcttcatcaaaggtataaagatttctcaccaagcctgattcaagggctcttgaaggta
ttttttcctggaaagtctggggatgatttggatgcagacaggaacttgaaggccatgaaa
aagcgcagcacactgaaactcctttcggaactttactttgttggagttatagaagacagt
ggcattttcatgaatatcattaaggatctcactagcttagaacatttaaaggacagggat
accactcagacgaatttgacccttcttgctagttttgctcgacaaggaagaattttcctg
ggacttccactctctggacaagagattcatgaagagtttttcaagggccttaacgtcaca
gcagatcaaaagaagttcttcaggaaggcattccatacatattatgatgctgcagctgag
ctacttcagtctgagcatggttcccttcatcaaatggagcatgaaaacgctaagatcctc
agtgctagaggagagctcaatgatgaaaatgcctcttcatatgaaaagctacgaaaatct
tatgatcatttgtatcgcaatgtctcatctttagcagaagcacttgatatgcagcctcca
gcaatgccagaggatggtcacacaactagggttactactggggagggtgcttcacctcct
gcttctgggaaagattcttctattctagaagctatatgggatgatgaagataccagggct
ttctatgaatgcttacctgatcttagagcatttgttccagcagtattattgggagaagca
gatcccaaagcgaacgagatatccatgaagatgcaggagcaacatactgaaccggcacct
gaatcagaccaagatcaacaagccgcccaagatgcagcagaagtttcttcagactctggt
gctttgcaggagggaaaaggcatagataaaggaaaggacaaggaggaaaaagataaagaa
aagattaaagattcggacaaagagaaaggaaaagaaaaggatgcagataaaaagggagaa
aatgaaaaggagaaatcaaaaggtcaggaaggcacaaatttggaggctttattacagagg
ctcccaggttgcgtgagccgtgatcttatcgatcaactgactgtggaattttgttattta
aattcaaagtcaaatcggaaaaagcttgtaagggggttgtttaatgtcccacggacatct
ctggaacttctaccgtactactcacgcatggttgccacactgtcaacttgtatgaaggat
gtctcttctatgcttttacagatgttggaggaggaatttaacttcttaattaataaaaag
gatcaaatgaacatcgaaacaaaaataaggaatattaggtttattggagaactctgcaag
tttaaaattgcaccagctggccttgtttttagctgtttgaaggcttgtctagatgatttc
actcaccacaacattgatgttgcttgcaatcttcttgagacatgtggccgttttctctat
cggtcacctgaaactacaatacggatggctaacatgttggaaatattgatgcgcttgaaa
aatgtcaaaaatctggatcctcgccacagcactcttgtagaaaatgcttactacctttgc
aaaccacctgaaagatctgcacgagtcgcaaaagtccgtcctccattacatcagtatatt
aggaaattactattttcagatcttgataagaccaccattgagcatgtcctgaggcaactt
cgcaaattgccatggagtgattgtgagccataccttttaaaatgctttatgaaggtttac
aaggggaagtatggtcagattcacttaattgcttctctcactgctggtttgagtcgctat
catgatgaatttgctgtggctgttgttgatgaggttttggaggagattagggtggggcta
gaattaaatgactatgggatgcaacaaagacgcattgcacacatgcgattcctaggggag
ctatacaattatgagcatgtagattcatctgttatttttgacacactttatttgattctt
gtcttcggccatggcactccagagcaagattcactagatccaccagaagattgtttccgc
atcaggatggttactactcttcttgaaacctgtgggcactactttgacagaggctcttcc
aagaggaagcttgatagattcttagtacatttccagaggtatattctcagcaaaggtgca
cttcctctggatattgaatttgacttacaggacttatttgctgaactaaggcctaacatg
actagatactcttctattgaggaagcgaatgcagctgtaatagaacttgaggagcatgaa
catagtgtttcagctgacaaggccaataacgagaagtactctgactcagaaaattcttca
agaaggactacttccaatgccaactcagtgaatggaaagagcattgggaatggcactgag
gaaaatggtagagtgcatgaagacattggaaacagtgatagtgattcggggagtggcagt
atagatcctgaaggacatgaagaggaagagttggatgaggagcatcctgatgatggctct
gatagtgaagatgaggatgatgatgacggggttggacctgcatctgatgaagatgaagtt
cacgttaggcagaaagtcacagaggtggatccacaggaagaagccaattttatgcaggag
cttaaggctgtagtgcaggagagcatggaacagcgacggcaagagctgcgaggtcgacct
gcattgaatatgatgataccaatgaatgtctttgaggggtccacaaaggatcatcatgga
agggggggtgttgtcggggaaagtggtgaagaggcattggatgaggagaccggaggaagc
aaggaggttcaggtgaaagttcttgtgaagcgtggtaacaagcaacaaacaaagcagatg
tacatccctcgggatagttcactcgtgcagagcacaaaacagaaagaagcagccgagctt
gaagagaaacaagacatcaaaaggctggtattggagtataatgacagagaagaagaggag
cttaatggattgggtacccaaacaatgaactggtcacatggtgcgggcaacagaggttcc
agccgtggcaacacttgggatggaactggtactagggctagtggatcacgtcatcggcat
cataattactcgggcagtggactctattacagcagaaaaaagtga
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