Carya illinoinensis (pecan): 122290006
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Entry
122290006 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 32
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122290006
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122290006
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
Helicases
122290006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
122290006
NCBI-ProteinID:
XP_042953446
LinkDB
All DBs
Position
12:complement(29875290..29880896)
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AA seq
739 aa
AA seq
DB search
MKKPKSKNLRKQSRLSEVEEIQLLTSWIQSGKPDSGSNPMSLPPLPPNSPVGRIDDASFS
RYAGATRFDQLPISKNTRDGLRKAGYVEMTDIQRASLPHALCERDILGAAKTGSGKTLAF
VIPVLEKLYKERWGPEDGVGSIIISPTRELAGQLFDVLQSVGKHHNFSAGLLIGGRKDVN
TEKERVNELNVLVCTPGRLLQHMDETPNFECSQLQVLVLDEADRILDVGFKKALNAIVSQ
LPKSRQTLLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPNRLQQTAMVVPLEEKLD
MLWSFIKAHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRMGIYSQFC
EKRSVLFSTDVASRGLDFNKAVDWVVQADCPEDVATYIHRVGRTARYHSGGRSVLFLLPS
EMKMLEKLQAAKVPIQFIKANKKRVQPVSGLLSALLVKYPDLQYSAQRAFVTYLRSIHIQ
KDKEIFDAMKLPIDEFSASLGLPMTPKIRFLKQKIKSTKVSGNSAVVEIENSDKEHVLEI
PKEKLDIGHIDVEEVNKDFLLTKDTPNKEEGKTSEIGDVRPMTRISKKKKLKINVHRPTG
TRVVFDEEGNALAPLARVAEAQSGNDAFLIDQGKKNEYYNKMREELKLVDKEDKLLERQR
LREKRIKEKMKLKRGHSEDEADEEELPGSEDEATGSRPHKKSKIYYDSDSDGEKKEKKDS
MSLEEQEALALKLLNSMHS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcccaaatccaaaaacctccgcaagcagagccgcctatcagaagtcgaagaa
atccagctcctgacctcatggatccaatccggaaaacccgactcgggttccaaccccatg
tcgctgcctccactgcccccgaactcgcccgtcggccgaatcgacgacgcttctttttct
cgttacgctggtgccacgaggttcgaccagctaccgatttcgaagaacactagagatggt
ttgcgcaaggctgggtacgtcgagatgaccgatatccagagggcttctctgccgcatgca
ctctgcgagagggatattcttggcgcggccaaaaccgggtcaggaaagactctggctttt
gttattccggttttggagaagttatataaagagagatggggtcctgaggatggggtaggc
agcatcattatttctcctacacgggaattagcaggtcaactttttgacgtgttgcaatct
gtagggaagcaccataattttagtgctggcctcctaattggtggacgcaaggatgttaac
acagagaaggagcgtgtaaatgagctgaacgtattggtttgcactcctggtcgtcttctt
cagcacatggatgagactccaaactttgaatgttcccagcttcaggttttggtccttgat
gaggcagatcgaattcttgacgtaggattcaagaaggctttaaatgctattgtctcgcag
ctacctaagagcagacaaacattgttattctcggcaactcaaacgaagtcagttcaggat
cttgcaagactgagtttgaaggacccagagtatctgagcgtgcatgaggagtctgtgact
gctactcccaaccgcctgcagcaaactgcaatggttgttccacttgaagaaaagctagac
atgttgtggagtttcataaaggcacatcttaattcaaagatcctagtgtttctttcaagc
tgtaaacaggtaaaattcgtctttgaagctttcaagaaactgcgccctggaataccctta
aagtgtcttcatgggaggatgaagcaggaaagaaggatggggatatactcccagttttgt
gagaagcgctcagtgctcttttcaactgatgtggcctcaagaggccttgattttaataag
gcagttgactgggttgtccaggctgattgtccagaagatgttgcaacttacatacacaga
gttggtcgcactgctcgttatcattctggagggaggtctgttttatttctgttgccctca
gaaatgaaaatgcttgagaaattacaagcagccaaagtacccatacagtttattaaggca
aacaaaaaaagagtacaacctgtttctggcttgttgtctgcactactagtcaagtaccca
gatttgcagtattcggcacaaagggcctttgtgacatatttgcggtctattcatattcag
aaagataaagaaatttttgatgcgatgaaactgcctattgatgaattttcagcatcattg
ggtctaccaatgactccaaaaatccgtttcttgaagcagaaaataaagtcaacaaaagtt
tcagggaactctgctgttgttgaaatagaaaactctgacaaggagcatgttctggagatt
ccaaaagagaagctagatattggccatatagatgttgaggaagtaaacaaggactttctc
ctgacgaaggacacacccaacaaggaagaagggaaaacaagtgaaattggagatgttagg
cctatgacacggatttcaaagaaaaagaaattgaagattaatgtacatagaccaacgggt
actagggtcgtatttgatgaagaaggcaatgcactagccccgcttgccagggtggctgaa
gcacaaagcggcaatgatgcattcctgattgaccaaggaaaaaagaatgaatattataac
aagatgagggaagagttgaagctggtggacaaagaagacaagctcctagagcgccagcgc
cttagagaaaaacggattaaggagaagatgaagttgaaaagaggacattcggaagacgag
gctgatgaggaagaacttcctgggtcagaagatgaagcaactggaagcagaccccataaa
aagtcgaagatatactatgatagtgatagcgatggtgagaaaaaagaaaagaaggattcc
atgtcactggaggagcaagaagcattggctcttaaattattaaactccatgcactcatag
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