Carya illinoinensis (pecan): 122290094
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Entry
122290094 CDS
T08745
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122290094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122290094
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122290094
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
122290094
NCBI-ProteinID:
XP_042953566
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Position
1:complement(55385678..55390947)
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AA seq
907 aa
AA seq
DB search
MDSLSERERPSKRTREDRDHRGRDHKHRSSRDDKHRDSSDHHHRHRSRRCRSREEREGSR
DRDSKRDRPNEDERERDGSIDRLERSYEPLSEREGSRERDRPKHRDAKREPLDEDYEDHY
ERPHERDGSVERRHSSQSHKRKERGSEERSDGGEKKARVLERRRFEDGKEASGEKRKEKR
KERRRFDDGVKKEEEEEEDNEGGLEDGKRVNMCEVKVQVKEEVSDGEHLGNYQSTTTANA
SGPAGNGAALESLTMESRRVPDTSFAPSHPFPTKVSSIYTTNENKGVSITRSHEVPGKSS
TDGTSSAAGKSGSLSLDALAKAKKALQMQKELSEKLKKIPLLNKGASSTPDGSPHLELKE
GLKAPSITTGTGQGPILSMAPTALSIGVASSSSSLPAAASVMSPATGPSAPAGLTTIPNI
EAVKRAQELAARMGFRQDPEFAPLINLFPGQMATDVAVPQKPSKAPVLRLDALGREVDEH
GNVVNLTKPSNLSTLKVNINKQKKDAFQILKPELDVDPESNPHFDGSLGINKTKLLRPKR
MAFQFVEEGKWSKEAEHIKLKSKFGEAQAKEQKAKQAQLAKAKAAPDINPNLIEVAERVI
TKEKPKDPIPEIEWWDLPVLQFGAYGDVTDATMAEDKLKMEKITFYVEHPRPIEPPAEPA
PPPPQPLKLTKKEQKKLRTQRRLAREKDKQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQ
DPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDEPSTLETIVSVYRIND
LSHPQTRFKVDVNAQENRLTGCAVISDGITVVAVEGGNKSIKRYGKLMLKRINWAAAVKE
EDEDEEESDDKPANKCVLVWQGSVAKSSFNRFTVHECMTEAAARKIFADAGVAHYWDLAV
NFSDDQT
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggacagcctctcggagagggagagaccaagcaagcgcacccgagaggatcgagaccac
cgcggtagagaccacaagcaccgatcctccagggacgacaagcatcgggactcctccgat
caccaccaccgtcaccgatctcggcgctgccgctcccgggaagaacgcgagggtagtaga
gatcgagattccaagcgcgataggcccaacgaggatgagagggagagagatgggagcata
gatcggctcgagaggtcttatgaaccgttgagcgagagggaggggagcagagagagagac
cggcctaagcatcgggatgccaaacgcgagccgttggatgaagattatgaggatcattac
gagagaccgcacgagagagacggttcggtggagaggcggcattcctcgcaatcgcacaag
aggaaggagagagggagcgaggaaaggagtgatggtggtgagaagaaggctagggttttg
gagagaagacggtttgaggatgggaaggaagcaagtggagaaaagaggaaggagaagaga
aaggagaggaggaggtttgatgatggagtgaaaaaggaagaggaggaagaggaagataat
gaagggggtttggaagacgggaaacgggtgaatatgtgtgaggttaaggttcaggtcaag
gaagaggtgagtgatggtgagcatctcggtaactaccagagcaccaccacggcgaatgca
agtggtccagcggggaatggtgctgctctggaatcactcaccatggaatctaggagggtg
cctgatacctctttcgctcctagccatccgtttcccacaaaggtatcttcaatttatacc
acaaatgaaaataagggagttagtattaccagatctcatgaggttcctggaaaatctagt
acagatgggacatcttcagctgctggaaaaagtgggagcctatctcttgatgctttagct
aaagcaaagaaagctttacaaatgcaaaaagaattgtctgagaagctgaagaagattcct
ctcctgaacaagggtgctagttcaactccagatggtagcccacacttggaattgaaggag
gggctgaaagcaccatctattactactggaacaggacaagggccaattctttctatggcc
cccacagcactttcaattggggtagcatctagttcatcaagcttacctgctgcagcttct
gtgatgtcacctgccactggtcctagtgcaccggcaggcctcacaactatacccaacatt
gaggcagtgaaacgtgcacaggaacttgctgccaggatggggtttcgtcaggacccagag
tttgctcctcttataaacttgtttccaggtcagatggcaacagatgttgctgtcccgcag
aagccatccaaggcccctgtgcttcgtctcgatgcacttggtagggaggtagatgaacat
ggaaatgtggtgaatttgacaaaaccaagcaacctcagcactctaaaggtcaatattaac
aaacaaaagaaggatgcatttcagattcttaaacctgaattggatgttgatccagaatca
aatcctcattttgatggaagtttgggaataaacaagactaagctgttgaggccaaagagg
atggcttttcagtttgttgaagaaggcaagtggtcaaaagaggcggagcatattaagttg
aagagtaaatttggagaagcacaagcaaaagagcagaaggcaaaacaggcccagttggct
aaggcaaaggcagcccctgatattaatccaaatttgatagaggtagcagagagagttatc
accaaagagaaacctaaggacccaattcctgaaattgagtggtgggatctgcctgttttg
caatttggtgcttatggtgatgttaccgatgctaccatggctgaagataaactaaagatg
gagaagatcactttctatgtggaacaccctcgtccaattgagccccctgctgagccagct
cctccaccacctcaacccttgaagctaaccaagaaggagcagaagaaacttcggacccag
cgacgtctggctagggagaaagataagcaggagatgattagacaaggcctaattgagcct
ccaaagcctaaagttaaaatgagcaatctgatgaaagttcttggttccgaagcaacccaa
gatccaacgaggcttgaaaaggaaatcaggagtgcagctgctgaacgggagcaagctcac
attgacaggaatattgctcgcaaactcactcctgctgagcgccgtgaaaagaaagagcgg
aagctttttgatgagccaagtacactggagaccattgtatcggtttaccggatcaatgac
ctgtcacacccgcagacccgcttcaaagttgatgtcaatgcccaggaaaaccgcctgact
ggatgtgctgtgatttctgatggcatcactgttgtggctgttgaaggtggtaacaagtcc
ataaagcggtatggaaagctcatgcttaagcgcataaactgggctgctgctgtaaaagag
gaagatgaggatgaagaggaaagtgatgataaacctgctaacaagtgtgtcttagtatgg
cagggaagtgttgcaaaatcgagcttcaataggttcactgttcacgagtgcatgactgaa
gctgctgcccgaaagatttttgcagatgctggtgttgctcattactgggatcttgcggtt
aacttttcagatgatcaaacataa
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