Carya illinoinensis (pecan): 122290436
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Entry
122290436 CDS
T08745
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122290436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122290436
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122290436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122290436
NCBI-ProteinID:
XP_042954047
LinkDB
All DBs
Position
12:complement(22853258..22859165)
Genome browser
AA seq
1287 aa
AA seq
DB search
MIDYSLPIARRTRQKQALIYKEYSEQKRKNEREENNGVNSYSSRRPSRGNRKKLMEDNIK
GVCGSQRLGTNCRAETETETVSVSDRSEEASVEEIHVNDSVEGCRTESRDFVGRKSMGLK
DDENSKTDFEGMNNIEEIMVDDSDEQMVVLPEGVGLDWVSSNCSSLKLGVQGDEDVVCIE
VDDGNGLSGKHVTECGSPHSSGKRDNDEMISSLKRKVESGCLILPDRKSSGVTGRTQSRL
GFLKMNEIEDGGDDRTWSRLGLLKGNEDGHGGVDAVSDDSDGSKGNTDEDGDGNTVSDGL
RRNVDEDGGDNVVSVDSDGFEISLKLESCDNFAASSSDSRAEEEEKEEDYVENENRGNHK
RVRPRGIDNGFKKRKSGLDVLLNSQNNKDSNINNDKGCCSVNPSKEFDCVAGRTRSHFTS
KWGKKKMELGTLSRPFCLDEEEMESLSGHDDSDDSDDSDDSDDSGDEGEVGSDYENEDDL
SDDETYLGGKKAASTRGKCKTNKGKLRMPTEGKCIRLVKSCDFMKILVDSMLEKGEFPLE
ELDCSRNEISGDESNPPVAETTLPLKFTFGIEESSPPEKSEDEKEMDELWAQLELALRAS
EIGSVDSAKVEDEDALPPEDDIDRATLCHLGNHRLILDEQVGLRCAFCSYVKMEIKYILP
SFSTNSCGKLDRRDAGGAMNHSIFNEFGSQYSGCDSYSDCDTRAHAEGTVWDIVPGIKSS
MYPHQRDGFEFIWKNIAGGIYVDKLENQTAFHGGNGCIISHAPGTGKTRLTIGFLQTYME
FYPSCRPIIVAPCSMLLTWEEEFHKWKFDIPFHNLNKSELSGKESRLTDYIVRQVGHLDQ
RDIRILKLYSWKMDRSILGISYKLFAQLTGEVERKGEVGLNIEHSQLRKVLLELPGLVVL
DEGHIPRNADSNILQALSNIKTEKRIILSGTPFQNNFDELYNTLCLARPQFANIRHKWGS
LTSSIAKATDDRMRCEKLKKVRDMIEPFVHVHKGSILQEKLPGLRDSVVILQPAQLQKSL
FDELCHRALTNHFKFEYYESLISVHPSLLLKCGEEKFPSDRDKLERLNPDAGVKTKFLME
LIRLSEAMNEKVLVFSQYLDPLIFVMDQLKSHFNWTEGNEVLYMDGQLDVKQRQSSINIF
NDPTSEVRVLLASIRACSEGINLVGASRVVLLDVVWNPSVERQAICRAHRLGQEKVVYVY
HLIVFGTKEEEKYYRQVEKDWLSELVFSPSDRSGDRKKLPPTDLQDEILEEMVKHEKLEH
IFEKIAYQQKESKLIETFTLLEKRPVI
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgatagactatagcttgccgatagcgaggagaactaggcaaaagcaagccctaatttac
aaggagtactccgagcaaaagagaaagaacgagagggaggagaataatggggttaactcg
tacagttcccgcagacccagtagaggtaatcggaagaaattaatggaggataatattaaa
ggggtttgtggttctcagagattagggactaattgtagagcggagacagagactgagact
gtttctgtgtctgatagaagtgaggaggccagtgtggaagagattcacgtgaatgattcg
gttgaaggatgcagaactgaatcgagggattttgtgggcaggaagagtatggggttgaaa
gatgacgaaaactctaagacagattttgagggaatgaacaatatagaggagattatggtg
gatgatagtgacgaacagatggttgttttgcctgaaggggtaggtttggactgggtaagc
tcgaattgttcaagtttgaaattaggggtgcagggagacgaggatgttgtttgcattgaa
gttgacgatgggaatggtttgagcgggaaacatgtgactgaatgcggtagtccacattcc
agtggcaagagagataacgatgaaatgatttcatcgttgaaaagaaaggttgagagtggt
tgcttaattttgcccgacaggaagagtagcggtgtgacgggcaggactcagtcacggtta
ggatttttgaaaatgaatgaaattgaggatggtggtgatgacaggacttggtcacggtta
ggactgttgaaagggaatgaagacgggcatggtggtgttgatgctgtatcggatgattca
gatggttcgaaagggaatacggacgaggatggtgatggcaatactgtctctgatggattg
agaaggaatgtggatgaggatggcggggataatgttgtttcagttgattcagatggattt
gagatatcgttgaaattggaaagctgtgataattttgcagcatcgagctcggatagcagg
gctgaagaggaagagaaagaggaagattacgtggaaaacgagaatagaggaaatcataag
agggtaaggccaaggggaatcgacaatggattcaagaagagaaaatctgggttagatgtg
ttgcttaattctcaaaacaacaaagatagcaatattaataatgacaaaggctgctgttct
gttaaccccagtaaagagttcgattgtgtggccggaagaactcgttcgcattttacctcg
aaatggggaaagaaaaaaatggagctcggaacattaagtcgccctttttgtcttgatgag
gaggaaatggaatctttatctgggcatgatgacagtgatgacagtgatgatagtgatgac
agtgatgatagtggtgatgaaggggaagttgggtctgattacgagaatgaagatgatttg
agtgatgacgagacttatcttggcggtaagaaagctgcgtctacgagagggaagtgcaag
actaacaaaggcaagctgaggatgcccaccgagggaaaatgtatccgtttggtaaagagt
tgtgattttatgaagattcttgtagattccatgttggagaagggagaatttcctctggaa
gagttggattgttctagaaacgaaatttccggagatgaaagcaatccaccagttgccgag
acaactctaccactgaagttcacttttggaattgaggagtcgagtccaccagagaaatca
gaagacgagaaagaaatggatgaactttgggctcagctggagcttgctctcagagctagt
gaaattggttcagtcgattctgctaaggttgaagatgaagatgcccttcctcctgaagat
gatattgatagagctaccctttgtcacctagggaatcatcggcttattcttgatgaacaa
gttggacttagatgtgcattttgctcatatgtgaaaatggagatcaagtatattctacca
tcttttagtacaaattcttgtggaaaattagacaggagggacgctggaggagcaatgaac
cactccatcttcaatgagtttggttctcaatattctggttgcgattcctattctgactgt
gatacccgagctcatgctgaaggcacagtgtgggacatcgttcctggtataaaaagtagt
atgtatccacatcagcgtgatggttttgaatttatttggaagaacatagctggaggaatt
tatgttgataagttggaaaaccaaacagcatttcatggtggaaatgggtgtattatttct
catgcacctgggacagggaaaactcgtttaaccattggttttctccaaacatacatggag
ttctatccgtcatgcaggcctattattgttgctccttgtagcatgctgctgacatgggaa
gaggagtttcataaatggaagtttgacatcccttttcacaatctgaacaagtcggagttg
tctggcaaggaaagtaggttgactgactacattgtgaggcaagttggacatcttgaccaa
agagatatccgtatcttgaagttatattcttggaaaatggatagaagcattctggggata
agttacaaactgtttgctcaacttactggagaagttgagagaaagggtgaagtagggcta
aatattgaacattctcagctcaggaaagtccttcttgagcttcctggtctagttgtcctt
gatgaaggacacattccccgtaatgctgacagtaatatccttcaggcattatcaaatata
aaaacggaaaagcgcattattctttcaggaactccgtttcaaaataattttgatgagcta
tataatactctctgcttggcaaggccacagttcgcaaacataagacataaatggggatct
cttacaagttcaattgccaaagccactgatgatagaatgagatgtgagaaactgaaaaag
gttagagatatgatcgagccatttgtacatgtacacaaaggttccatcctacaagaaaaa
cttccagggttgagggactctgtggttatattacagccagcccaactgcagaagagcctt
tttgatgaactctgtcatcgtgctttgacgaaccattttaaatttgagtactacgagtct
ttgatctctgtccatccttcactcttgctcaaatgtggggaagaaaagtttccttctgac
agggataagttagaaagattaaatcctgacgctggagtaaaaacaaagtttctaatggaa
ctcatccgactcagtgaggcaatgaatgaaaaagttttggttttcagccaatatcttgac
ccgttgatctttgtaatggaccagcttaaatctcattttaattggactgaagggaatgag
gtgttgtatatggatggacagctagatgtaaagcagcgccagtcctcaattaacattttc
aatgatccaacaagtgaagtaagggtgttacttgcgtcaattagggcttgttctgaaggt
ataaatctggttggggcttcaagggttgttttactggatgttgtatggaatccatcagtc
gaaagacaagctatatgccgagcacataggcttgggcaggaaaaagtagtgtacgtctac
catctcattgtcttcgggacaaaggaagaggagaaatattatcgtcaagttgagaaggac
tggttgtctgagttggtattctctccttcggacaggagtggtgatcggaagaaactccca
cctacagatctacaagatgagattttggaagagatggttaaacatgagaaacttgaacat
atctttgagaagatagcataccaacagaaagagtctaaactgatcgaaacatttaccttg
ttggagaagagaccagttatatga
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