Carya illinoinensis (pecan): 122290476
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Entry
122290476 CDS
T08745
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122290476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122290476
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122290476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
122290476
NCBI-ProteinID:
XP_042954138
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All DBs
Position
12:complement(30356986..30361205)
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AA seq
475 aa
AA seq
DB search
MESDLGKLFIGGISWDTDEEHLKDYFSKYGEVVEAVIMRDRATGRARGFGFVVFADPAVA
ESVIMDKHMIDGRTVEAKKAVPKDDQHILNRNTASFLGSPGPGRTKKIFVGGLASTVTES
DFKRYFDQFGAITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKQFHELNGKMVEVKR
AVPKELSPGPSRSPLIGYNYGLSRANSFLNSYYNVSPVGGYGVRMDGRFNQVASSRGGFS
PFGTPSYGMGLNLELGLSPSFVGSSNFGNSDGYARMLSPYYSGSSNRYSTPIGYSGGNGR
GGSLSSSTNRNVWGNGVLNNVVNPSSPVTYLGSGSGAFGDFGNSSANWGPSPVSTRGGGS
PPGYNGGSIGYGNGDSGFGLGGGVYRRNSSSSVAQSSSSFAASTAGYEGSYGDLYRSGSV
YGDSTWRSATPELDISGSFGYGLGNMSSDVTSQSSEGYIGSYNVTSRQSNRGIAA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagatcttggaaaactcttcattggtgggatttcttgggacacagatgaagaa
catctcaaagattattttagcaaatatggggaggtggttgaggcagtgatcatgagagat
cgtgccaccggtcgtgctcgcggctttggtttcgttgtctttgcggatcctgctgttgca
gaaagcgtcatcatggataagcacatgattgatggccgcacagttgaagcaaagaaggct
gttcctaaggatgatcagcacattttaaatagaaacacggctagttttcttggttctcca
ggtcctggacgtaccaaaaagatttttgttggaggtctagcatccactgtcacagagagc
gactttaagagatactttgatcagtttggtgcaattaccgatgttgtagttatgtatgat
cacaacacccagaggccaagaggctttggcttcatcacctatgattctgaggatgcagtg
gatagagtgctgcataaacagtttcatgaactgaatggtaagatggttgaggtcaagagg
gcagtccccaaagagctgtccccagggcccagccggagccctcttataggatataactat
ggtttgagtagggccaatagtttccttaacagttattataatgtgagcccagttggaggt
tacggagtcaggatggatggaaggtttaatcaagttgcaagtagtcgaggtgggttttcc
ccttttggtacacctagttatggaatgggtttgaatttggagctagggctgagcccaagc
ttcgttggcagttccaactttggcaatagtgatggatatgcacggatgttgagtccttat
tatagtggcagttcaaacaggtatagtactcctattgggtatagtgggggtaatggtaga
ggtggttctctttcaagctcaaccaatcggaatgtatggggaaacggggtccttaacaat
gttgtgaacccttccagccctgttacttacttgggttctggaagtggggcttttggagat
tttggaaatagcagtgcaaattggggcccttctcctgtttcaacccgaggtggagggagt
cctcctggttataatggtgggagtattgggtatggcaatggagacagtggctttgggttg
ggagggggagtgtatcgaagaaatagtagctcaagtgttgcacaatcatcttcatcattt
gctgcatcaactgcaggctatgaggggtcctatggtgatttgtatcgtagtggttcagtt
tatggtgattcaacttggcggtctgcaactcctgagctggacatttcaggctcatttggt
tatgggcttggcaatatgtcttcagatgttaccagccaaagttctgagggttatattgga
agttacaatgtcacaagtagacaatcgaatagaggaattgctgcatag
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