Carya illinoinensis (pecan): 122290538
Help
Entry
122290538 CDS
T08745
Name
(RefSeq) elongator complex protein 1
KO
K11373
elongator complex protein 1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cill03016
]
122290538
Transfer RNA biogenesis [BR:
cill03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
122290538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
A-sol_ELP1
Beta-prop_ELP1_2nd
TPR_ELP1
HB_ELP1
Beta-prop_WDR19_1st
TPR_GEMI5
WD40_WDHD1_1st
Beta-prop_EML_2
DUF2982
Beta-prop_Vps41
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
122290538
NCBI-ProteinID:
XP_042954235
LinkDB
All DBs
Position
1:complement(55733170..55738493)
Genome browser
AA seq
1311 aa
AA seq
DB search
MNNLKLYSELSSKLELESKEEDESVLFSAFDIERSRLFFASSANRIYTTHLSSFHNERTW
SLSADVDSIDLEPNDYITALEYLMEKEALVIGTFDGLLLLHGVDGNETTMVGRVEGGVRC
ISPSPDGDVLAVLSRLGQILVMTHDWDLLYETALEIVPEGVDVREPTSSRYESPISWRGD
GKYFVTLSEVCDSITLLKRIKVWERDSGALHATSESKAFMGSVIEWMPSGAKIAAVCDRK
TDSECPSIVFFERNGLERSSFRINEQMDSTIDILRWNCTSDLLAAIVKCEKHDAVKIWLF
SNNHWYLKHEIRYSKKDGVKFMWDPTKPMQLICWTLGGHITLYNFIWNTAVTENSISLVV
DDSKIFVTPLALSLTPPPMYLFNLKFPSAVREISLYSKNTKNCLAAFLSDGCLCVIELPT
VDTWDELEGKQFIVEASISESVFGSVVHLIWLDSHILLAVSRYGFDHYLSRISSNEDGIL
GFYLQEIELSCSEDHVPGLLTCSGWHAKISHQNSLEGQVIGIAPNPTRRCSAYIQFDGGK
IFEYTSRIGALKHNDLSFSSSCPWMSVVSVADGGSLKPLLFGLNDIGRLNVGGRILCSNC
SSFSLYSNLADQVITHLILATKQDLLYIVGINDILNGTLEMYEDFIHTGNRRREEIKTFI
KIWERSAKIVGVLHGDEAAVILQTTRGNMECIYPRKLVMASIINALVQERFRDALLMVRR
HRIDFSVMVDHCGWQAFLQSAAEFVRQVNNLSHITEFVCAIKNENVTEGLYGDIISLPRS
KDIKDLKARDPKGLDVNNKVSSVLLAIRKALEEQLPESPARELCILTTLARSDPPLLEEA
LVRIKVTREMELSSSNDPKRRSYPSAEEALKHLLWLSDSEAVFEAALGLYDLNLAAIVAL
NSQRDPKEFLPFLQELERMPDLLMRYNIDLRLCRYVNALKHIVSAGDAHYDDFMNLMKKN
PQLFSLGLRLINDPAKRKQVLEAWGDHLSEEKCFEDAATTYLCCFSLEKALKSYRACGNW
SGVLTVAGLLEMGKDEVMKLAHELSEELQALGKPGEAAKIALEYCGDVNEGINLLISARD
WEEALRVAFLHGREDLILEVKNASLECASMLIGEYEESLEKVGKYLARYLAVRQRRLLLA
AKLQAEERSMSDLDDDTASEASSNFSGMSAYTTRTRKTTSSSIISSAASKARDMRQQRKR
GKIRPGSPGEEMALVEHLKGMSLTAGAKRELKSLLGSLVMTSEEATARKLQHTAENFQIS
QMAAVQLAEDAMPSDSINEQAHTLELYIQRVKSEAQNSEAFFWRSKIFLYP
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatctgaagctttactcggagctctcttcgaagctcgagctagagtcgaaggaa
gaagacgaatccgtactattctcggccttcgatatcgagcggagccgcttgttctttgct
tcttctgccaaccgtatttacaccactcatctctcctcattccataatgaaaggacgtgg
agcttatctgcggacgtggattccatcgacttggagcccaatgactacatcaccgccttg
gagtatctgatggagaaagaggcgctggtaatagggacatttgatgggcttttgttgctg
catggtgtggatggaaatgaaaccactatggttggtagagtggagggtggggttaggtgc
atctcacccagtcctgacggggatgtgcttgctgtattaagtcgtctggggcagatactg
gttatgactcatgattgggatttgctgtatgagactgcactggagattgttcctgaaggt
gttgacgtacgtgaacccacctcttctagatatgagagtcccatttcttggcgaggtgat
gggaagtactttgtgacactgagtgaagtttgtgattctattaccttgcttaagaggatt
aaggtatgggaacgagattcaggggcattgcatgctacttcagaatcaaaggcatttatg
ggatcagtaattgaatggatgccaagtggagcaaaaattgcggctgtttgtgacaggaaa
acagacagtgagtgcccatcaatagttttctttgagaggaatgggttagaaagaagctca
ttcagaatcaatgagcaaatggattcaacaatagacattctgaggtggaattgcacatca
gatcttcttgcagccattgtcaaatgtgaaaaacatgatgctgtaaagatctggttgttc
agcaataatcattggtacttaaagcatgaaattaggtactctaagaaggatggagtgaag
ttcatgtgggacccaacaaagccaatgcagttgatttgttggactcttggggggcatatc
acgctttacaacttcatctggaatacggctgtcacggagaactcaatatcattagttgtt
gatgattccaagatttttgtgactccccttgctttgtctcttacgccacctcctatgtat
ctattcaatctgaaattcccgagcgctgtccgggagatatctttatattccaagaatact
aagaactgtttggctgcttttctatcagatggttgtttgtgtgtcatagagctccccaca
gttgatacttgggatgaacttgaaggcaaacaatttattgttgaagcctccatatctgaa
tctgtgtttggatctgttgtacatcttatatggttggattcgcatatactgcttgctgtt
tcccgttatggttttgatcactacttgtccagaatttcatcgaatgaggatgggattctt
ggcttttatttgcaggaaattgagctttcatgctctgaggatcatgtcccaggtttgctg
acatgctcaggctggcatgcaaaaatttcccatcaaaactctctggaagggcaggttatt
ggcattgctcccaaccctaccagaagatgttcagcttatattcagtttgatgggggaaaa
atctttgagtatacgagtaggataggggccctgaaacataatgatttgagtttttcatca
tcttgcccttggatgagtgtggtttcagttgctgatggtggatcattgaagcctttgctt
tttggactcaatgacattggcaggttgaatgttggtgggaggatattgtgcagcaactgc
agcagtttttcattgtactccaatttggctgatcaagtgatcacgcatttaattcttgca
actaaacaggatttgctctacatagttggcattaatgatattttgaatggaacattagaa
atgtatgaggacttcatccacaccggtaacaggagaagagaggaaattaaaacatttata
aaaatatgggaaagaagtgccaaaattgttggcgtcctgcatggagatgaagctgctgtc
atattacaaacaactaggggaaatatggaatgtatctaccctagaaaattagtcatggcc
tctatcatcaatgcattggtccaagaacgcttcagagatgcactactcatggtcaggcgg
cataggatagatttcagtgtcatggttgaccattgtggttggcaagctttcctccaatca
gctgcagagtttgttaggcaggttaacaatttgagccacataactgagttcgtttgtgcc
ataaagaatgagaatgtcacagagggactgtacggagatatcatatctttacctcgctca
aaggacatcaaagatctgaaagctagagatccgaaaggtcttgatgtcaataacaaggtt
tcttctgttctgctggccataaggaaggctcttgaagaacaactaccagaaagccctgca
agggaactttgtatcttgactactcttgctcgtagcgatccgccattgcttgaagaagct
ttggtgagaataaaagttactcgtgaaatggaattatcaagttctaatgaccctaaaaga
aggtcttacccttctgctgaagaagctttgaagcatctcttgtggttatctgattccgag
gctgtgtttgaggctgctttaggcctttatgatttgaaccttgccgctatagtagcattg
aactcacagcgagatccaaaagaatttcttcctttccttcaagagttggaacgcatgcca
gatctcttaatgcgctacaatattgaccttaggctgtgcaggtatgtgaatgctctcaaa
cacatcgtttctgcaggagatgctcattatgacgattttatgaacctcatgaagaaaaat
cctcaacttttttcattgggacttcgacttatcaatgatcctgccaagaggaagcaagtc
ctcgaggcatggggagatcatcttagtgaggaaaaatgttttgaggatgctgctacaact
tatttgtgctgtttcagtttggaaaaggctttaaagtcatatcgtgcttgtggtaattgg
agtggtgtgcttacagtggctgggctccttgagatgggaaaagatgaggtcatgaaactc
gctcatgagctttctgaagaacttcaagctcttggtaaacctggggaagctgccaaaatt
gctctggagtattgtggagatgtaaatgagggcattaatttgttaattagtgcaagagac
tgggaggaagctttgagggttgcatttttgcacgggagagaggatttaatcttggaagtg
aagaatgcatctttggaatgtgcaagcatgctaataggagaatatgaggaaagcttggaa
aaagttgggaagtatctggcccgctacttagctgttcgacagagaagattacttcttgct
gcaaagctccaggctgaggaacggtcaatgagtgatcttgatgatgatactgcttcagag
gctagcagtaatttcagtggaatgagtgcttacaccacaaggaccaggaagaccacatcg
tcttccatcatctcaagtgcggcaagcaaggccagagacatgaggcaacagagaaagaga
ggaaaaatccgtcctggaagccctggtgaggaaatggctctggtagagcatttgaaaggc
atgtctctaacagctggagcgaagcgtgaactcaaatctttactgggatcccttgtaatg
accagtgaggaagcaactgcaaggaagctgcaacacaccgcagagaactttcaaatatct
caaatggcagcagttcagctagctgaagatgcaatgccgagtgatagcataaatgagcaa
gcacatactttggagctgtacatacaaagagtgaaaagtgaagcgcaaaattcagaggcc
ttcttttggcggtctaaaatattcctctatccttaa
DBGET
integrated database retrieval system
