KEGG   Carya illinoinensis (pecan): 122291577
Entry
122291577         CDS       T08745                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03082  ATP-dependent chromatin remodeling
cill03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122291577
   03083 Polycomb repressive complex
    122291577
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cill03036]
    122291577
Chromosome and associated proteins [BR:cill03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     122291577
  Histone modification proteins
   HAT complexes
    HATB complex
     122291577
   HDAC complexes
    Sin3A-HDAC complex
     122291577
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     122291577
    PRC2.2
     122291577
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     122291577
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122291577
  Chromatin remodeling factors
   NuRD complex
    122291577
   NuRF complex
    122291577
   NuRF complex (fruit fly)
    122291577
SSDB
Motif
Pfam: CAF1C_H4-bd WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_RFWD3 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 WD_LRWD1 eIF2A Beta-prop_RIG_1st Beta-prop_HPS5 MIOS_WD40 NBCH_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 WDR90_beta-prop_4th Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 122291577
NCBI-ProteinID: XP_042955297
LinkDB
Position
13:1927902..1931228
AA seq 423 aa
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRADVGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE
GYGLSWSKFKKGHLLSGSDDAQICLWDINATPKNKSLDATQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQHLLIWDLRTPSVSKPVQSVIAHQSEVNCLAFNPSNEWVVATGSTDKTVKL
FDLRKISTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDLPEETT
KAA
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgggaaaagacgaggaagagatgagaggggagatcgaggagaggctcataaacgaggag
tacaagatctggaagaagaacacccccttcctctacgatctggtcattacccacgccctc
gagtggccttctctcaccgtcgagtggcttccggaccgagaggagccccccggcaaggac
tattcggtccagaagatgatcctcggcacccacacctccgaaaacgagcccaattacctt
atgctcgcccaggtccagctccccctcgaggacgcggagaacgacgcccgccactacgat
gacgaccgcgccgatgtcggtgggttcggctgcgccaatggcaaggtgcaaataatccag
caaataaatcacgatggagaggttaatcgtgctcgctatatgcctcaaaacccgtttatt
atcgccactaagacagttagtgctgaagtctatgtttttgattatagcaaacacccatct
aagcctcctctagatggggcgtgtagtcctgacttaaggttgaggggccacaacactgaa
ggatatggcttatcctggagtaagtttaaaaagggccatttactgagcggctctgatgat
gctcagatatgtttgtgggatattaatgcaactcctaagaacaaaagcctcgacgccaca
caaatttttaaggttcatgaaggtgttgtagaagatgtagcttggcatctgaggcacgaa
tacttatttggttccgttggtgatgatcagcacctgcttatatgggatctccggactcca
tcggttagcaagcctgtccaatccgtcatcgctcatcaaagtgaggtaaactgcttagct
ttcaatccctctaatgaatgggttgttgcaacggggtctactgataaaaccgtaaagttg
tttgatctacgtaagatcagcactgcgctccacacctttgattgtcacaaggaggaagtt
ttccaagttggttggaatccaaaaaatgagactatattagcttcttgttgccttggtagg
agactcatggtgtgggatcttagcaggattgatgaagaacaaacgccagaggacgccgaa
gatggaccgccagagttactctttattcatggtggtcacacgagtaaaatatctgatttt
tcttggaacccgtgtgaagattgggttattgctagcgtagctgaggataacatacttcaa
atctggcagatggcagagaacatctaccatgatgaagatgatttaccagaagaaacgaca
aaggctgcttag

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