Carya illinoinensis (pecan): 122291691
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Entry
122291691 CDS
T08745
Name
(RefSeq) protein GAMETOPHYTE DEFECTIVE 1
KO
K03539
ribonuclease P/MRP protein subunit RPP1 [EC:
3.1.26.5
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122291691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122291691
03016 Transfer RNA biogenesis [BR:
cill03016
]
122291691
03029 Mitochondrial biogenesis [BR:
cill03029
]
122291691
Enzymes [BR:
cill01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
122291691
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
122291691
Transfer RNA biogenesis [BR:
cill03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
122291691
Mitochondrial biogenesis [BR:
cill03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
122291691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_P_p30
Gmx_para_CXXCG
DUF249
Motif
Other DBs
NCBI-GeneID:
122291691
NCBI-ProteinID:
XP_042955505
LinkDB
All DBs
Position
13:11984148..11992080
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AA seq
659 aa
AA seq
DB search
MGFFDLNVPYLESSPSTDRMPFKAARTKLVIKAMELGYTGIAYNNTIKGVMSDHDRCAVS
LLTLSSLLKLVPSLASSVNLHRDLLGVPRASPFRQYTRLTVCVESLLQAQALNSGNPILK
TYDLVAVRPLNQVVFDQACEKSEVDIIAIDFSEKIPFRLKLPMVKAAIERGVYFEITYSN
LIADVQTRRQMISNAKLLVDWTRGKNLIFSSAAPSVNELRGPYDVANLSSLLGLSMERAK
AAISKNCRTLIANALRKKHFYKDAIRVEVLSSDGQLDCNKPLSGDWFKWDPISSGEGDLL
LENMAKSFPASNKISKTVKAIDFASVVNGMTSHGFQVNALTSQTEGLPQPPDNGKNFLPA
AAVVEVAGAASGQIEQLDRLDLLTEPDPTSSYDSPLIRQTSVCEDSQNLFSPNDTSTGLS
NSEEIRIPTTASKEEKENLNGSDVNLSLNAAEKYDFQLQKSLSSCESHIVPPNENVIFHA
LSRDLELAAPCDADAKVELATVFEDIVLPASKNEESQSPKNSDGVLDFVMDGERMEVDMK
NKEITPLDTNDGSLSGSFLETEQFREPMNGAGALTDCLPISDSYPEMTIIGDSSIAKHES
TEVTMEEKGHGESDTEANQTLVQSISGRSRPRSRTSHGAMLFPLNRLLITTAFKRKPRR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcttcgacctgaatgttccgtacctcgaatcctccccgtcgaccgataggatg
ccgttcaaagcggcgcgcacgaagctcgtgataaaggccatggagctaggctacaccggc
atcgcctacaacaatacgatcaagggcgttatgtccgatcacgaccgttgcgccgtctct
ctcctcactctttcctctcttctcaagctcgtaccctccctcgcctcctccgtcaatctc
caccgcgatctcctcggcgtcccacgcgcgtccccctttcgccaatatacgcgcctcact
gtgtgtgtagaaagcctccttcaggcccaggccctcaactctggtaaccctatcttaaag
acttacgacttggtcgctgtgaggcccttgaaccaggtcgtcttcgaccaggcctgtgag
aaatccgaggtagatataatagcaattgatttctcagagaagattcctttccgattgaag
ctgcctatggttaaagcagccattgagcgtggagtttattttgagatcacgtattccaat
cttattgcggatgtccaaacaaggaggcaaatgatatccaatgctaagttactggtggac
tggactcgaggaaaaaatctcattttctcaagtgctgccccctctgtgaatgaactaaga
gggccatatgatgttgcaaacttatcgtcattgcttgggctctctatggaacgagctaaa
gcagcaatttccaaaaattgtaggactctcatagctaatgctttaaggaaaaaacatttt
tacaaggacgcaatcagagttgaagtactatcatcagatggacaattagactgcaacaaa
cctttgtctggtgattggtttaaatgggatcccatctctagtggtgaaggtgatttgcta
ttagagaacatggcaaagtcttttcctgcctccaataaaatatcaaaaactgtgaaagcc
attgattttgcttctgttgttaacggcatgacatctcatggttttcaagtcaatgctttg
acatctcaaactgagggtttgccccaaccaccagataatggaaagaactttttgcctgct
gctgcagtagttgaggtagctggtgcagccagtggacagattgaacagcttgatagactt
gatcttttaacagaaccagatccaacttcatcatatgattctccattaatacgtcaaacc
tctgtctgtgaagattctcaaaatttattttcacccaatgatacttcaacgggtctctct
aactctgaggaaatcagaattcctacaaccgcctccaaagaagaaaaagagaatctaaat
ggttcagatgtgaatctttctttgaatgcagcagaaaaatatgattttcaactacaaaaa
tctctctctagctgtgaatcgcatattgttccaccaaatgaaaatgtaatatttcatgca
ttgagtagggacttggagttagctgctccttgtgatgcagatgctaaagtagagcttgcg
acagtgtttgaggatattgttcttcctgcttctaaaaatgaagagtctcagagtccaaaa
aactctgatggagtcttggattttgtaatggatggagagagaatggaggtggacatgaaa
aataaagaaataacacctttggacacaaatgatggatctttatctgggtcttttctggag
acagaacaatttagagaacccatgaatggtgcgggtgcactcactgattgccttccaatt
tcagattcttatccggagatgacaattataggtgattcttctattgcaaagcatgagtca
acagaggtgacaatggaagagaaagggcatggagaatctgatactgaagctaatcaaacc
ttggttcaatccatatcaggcagatcaagaccaaggtcgaggacttctcatggagcaatg
ttatttcctttgaatcgtttgttgattactacagctttcaagaggaaaccaagaagatga
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