Carya illinoinensis (pecan): 122291713
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Entry
122291713 CDS
T08745
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122291713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122291713
Membrane trafficking [BR:
cill04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122291713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
zf_RING_Vps8
Beta-prop_HPS5
Beta-prop_EML_2
WD40_Prp19
WDR55
EIF3I
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
PEP5_VPS11_N
zf-RING_2
Beta-prop_WDR11_2nd
zf_RING_Vps8_fungal
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
122291713
NCBI-ProteinID:
XP_042955542
LinkDB
All DBs
Position
13:complement(28309128..28331824)
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AA seq
953 aa
AA seq
DB search
MAPIPSENGVEGDDEREEEDDEEEEEEEEEEDEPRLKYQRMGGSIPALLASDTASCIAVA
ERMIALGTHGGTVHILDFLGNQVKEFHAHKAAVNDLSFDMEGEYVGSCSDDGSVVINSLF
TDEKMKFEYHRPMKAIALDPDYARKTSRRFVAGGLAGHLYYNTKKWLGYRDQVLHSGEGP
IHAVKWRTSLIAWANDAGVKVYDTADDQRITFIERPRGSPHPELLVPHLVWQDDTLLVIG
WGTSIKIASIRTNQHRVTNGTYRHVPMPSMNQVDIVASFQTSYFISGVAPFGDTLVVLAY
IPGEEDGEKQFSSNLPSRQGHAQRPEVRIVTWSNDELSTDALPVHGFEHYKAKDYSLAHA
PFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAAVEAGQ
GRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPY
IPTENPRLRDTAYEVALVALATNPSFHEDLLSTVKSWPRVIYSALPVISAIEPQLNTSSM
TDPLKEALAQLYIIDGQYEKAFSIYADLMKPEVFDFIEKYNLHHAIREKVVQLMMIDCKH
AVPLFIQNKDLISPSEVVSQLLNASNKHDHRYFLHLYLHSLFEVNPHSGKDFHDMQVELY
ADYDPKMLLPFLRSSQHYTLEKAYEICVRRDLLREQVFILGRMGNSKQALAVIINNLGDI
EEAVEFVTMQHDDDLWEELIKQCLHKPEMVGVLLEHTVGNLDPLYIVNMVPNGLEIPRLR
DRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARHGIYLSNEEDEARAKRNSSM
SSQVTEKSSSVRTAEVKSKTKGGARCCMCFDPFSIQNVSVIVFFCCHAYHTNCLMDSTYN
VGGKKEYGTTSREPLDYEYDNGDVDDDDDDSHDEGSQSGVRRMRCILCTTAAS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggctccgattccctcggagaacggcgtcgagggagacgatgagagagaagaagaagac
gacgaggaagaagaagaagaggaggaggaagaagatgagccgaggcttaagtaccagaga
atggggggcagtataccggccctgctggcgagcgatacggcgtcgtgtatcgcagtcgct
gagcgcatgatcgctctcggtacccacggcggcaccgtccacatcctcgattttcttggg
aaccaggttaaggaattccatgctcataaagcagctgtcaatgaccttagcttcgatatg
gaaggagaatatgtaggaagctgttctgatgatggatctgttgtaataaacagtcttttc
actgatgagaaaatgaagtttgagtatcatcgtccgatgaaagctattgctctggaccca
gattatgcaagaaaaacgtcaagaagatttgtagctggtggtttagcaggtcatttatat
tataataccaagaaatggctaggctatcgtgatcaggttttgcattctggtgaaggtcca
attcatgcggtgaaatggagaacaagtctcattgcttgggctaatgatgcaggcgtgaaa
gtttatgacactgcagatgatcagcgtataacatttattgaaagaccaagaggaagccca
catcctgaacttttggttcctcacttagtttggcaggatgacactctcttggtcattggc
tggggaacatccataaaaattgcatccattagaacgaatcaacatagagtaactaatggg
acatatagacatgttccaatgccaagtatgaaccaggtggatattgtggcatctttccaa
accagctatttcatttcaggagttgctccctttggtgacactttggttgttctagcatat
attcctggggaagaagatggggagaagcaatttagtagcaaccttccatcacggcaggga
catgcacagagaccagaagtacgcatagtaacatggagtaatgatgaactttcaacagat
gccctgcctgttcatggttttgagcattacaaggcaaaggactattccctagctcatgct
cctttctcaggtagcagctatgctggcggtcaatgggctgcaggtgatgagccattgtat
tatattgtatccccaaaggatgtagttattgcaaaaccaagggacaccgaagatcatatt
gcttggcttcttcaacatgggtggcatgaaaaagctttggcagctgttgaagctggtcaa
ggacggagtgagctacttgacgaggtgggatctaggtatctcgatcatttgattgtggaa
aggaaatatgctgaagctgcatctttgtgtcccaaattattgcgaggatctgcttcagca
tgggaaagatgggtcttccactttgctcatctccgtcagcttcctgtgttggttccatac
ataccaacagaaaacccaagactgcgtgatactgcttatgaggttgctcttgtagctttg
gctacaaatccttctttccatgaggatctcttgtcaactgtcaaatcttggccacgtgtg
atttattctgcattgcctgttatttcggccattgaacctcagcttaatacttcatccatg
actgatccgctcaaagaggcactagcacagttgtatataatagatgggcaatatgagaaa
gccttttcaatctatgccgatcttatgaagccagaagtctttgacttcatcgaaaaatat
aacttgcatcatgcaattcgtgaaaaggttgtgcaacttatgatgatagattgcaagcat
gcagttccgttatttatacaaaataaggacttgatcagtccatctgaagttgtttcacaa
cttctgaacgccagcaataagcatgatcatagatatttcctgcacctatacctccattca
ttatttgaagtaaatccacattctggaaaggattttcatgacatgcaggtggagctttat
gcagactatgacccaaagatgttacttccttttcttcgtagtagtcaacattatacactt
gaaaaggcatatgaaatttgcgtcagaagagatcttctaagggaacaagtattcatcctg
ggaagaatgggaaattctaaacaagcccttgctgtcattataaataacttaggggatata
gaggaggctgtagagtttgtgaccatgcagcatgatgatgacctttgggaagaattaata
aagcaatgtcttcacaaacctgaaatggtcggtgttttgttggagcacacggttggaaat
cttgatcctctctatattgtaaatatggttcccaatggcttggagatacctcggcttagg
gatagacttgtcaagatcattaccgattacaggactgaaacatctctaagacatggttgc
aatgatattctcaaggctgattgtgtcaacctcttggttaaatactacaaagaggcaaga
catgggatttacttgagcaacgaagaagatgaagcacgggcaaagaggaacagcagtatg
tcttctcaggtgactgaaaaatcatctagtgtaagaaccgcggaggttaagtctaaaact
aaggggggtgcaaggtgttgcatgtgttttgatcccttctctattcaaaatgtatcagtc
atcgttttcttttgctgtcatgcttatcacacgaactgtcttatggattctacctataat
gttggcggcaagaaagagtatggaaccacttctcgggagcctttagactatgagtatgat
aacggtgatgtagatgatgatgatgatgatagtcatgatgaaggttcgcagtcgggtgtg
cgtcgtatgcgttgcattttatgtactacagctgctagttga
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